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35 Open 23 Closed
35 Open 23 Closed
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Issues list

400mb of .Sam but no off target
#76 opened Jul 3, 2024 by piailmitico
ImportError: cannot import name 'demultiplex' from 'umi'
#75 opened Jul 3, 2024 by qicheng-ma
How to combine multiple samples into one MERGED group in test_manifest.yaml
#74 opened Jun 7, 2024 by qicheng-ma
unsupported operand type(s) for +=: 'int' and 'NoneType' in 2024
#73 opened Apr 1, 2024 by Ohmori-Insilico
How to repeat your Results?
#72 opened Jul 4, 2023 by Bathroomboss
TypeError: load() missing 1 required positional argument: 'Loader'
#69 opened Jul 16, 2022 by mhtran145
2
First line of data is skipped in visualize step
#67 opened Oct 9, 2021 by zheins
Using Pos and Neg strand libraries to identify cleavage events
#66 opened Sep 25, 2021 by phoman14
yaml with multiple controls
#65 opened Aug 27, 2021 by jsacco1
2
Filter step: Background file
#63 opened Feb 23, 2021 by jsacco1
1
Missing index files
#60 opened May 31, 2020 by nechamaklt11
1
UIMtagg
#59 opened Dec 29, 2019 by EMMA-MGH
Stable branch to use? Or only releases?
#56 opened Aug 15, 2019 by cjfields
unsupported operand type(s)
#55 opened Jul 8, 2019 by frankMusacchia
@martinaryee @sowmyaiyer
9
demultiplex failure
#49 opened Jan 22, 2019 by Salvobioinfo
4
Fastq downloaded from SRA showing error at identify off-targets step
#48 opened Aug 6, 2018 by asgarhussain
4
Error while running test data
#47 opened Aug 4, 2018 by asgarhussain
1
absorb split_pipeline branch into dev/master
#43 opened Mar 6, 2018 by sowmyaiyer
Draft release notes for v1.1
#42 opened Nov 28, 2017 by martinaryee
@josemalo
1
Add blacklist sites and filtering instructions to README
#41 opened Nov 28, 2017 by martinaryee
@josemalo
Add SNP calling code and usage instructions
#40 opened Nov 28, 2017 by martinaryee
@josemalo
failure to demultiplex manifest
#39 opened Oct 12, 2017 by wconnell
4
Add an output table that is filtered for sites present in control and sites without a sequence match
#38 opened Jun 15, 2017 by martinaryee
@vedtopkar @martinaryee @shengdar
Parameter --window_size for Cas9 in command line
#37 opened May 26, 2017 by josemalo
Too many files open during demultiplex
#36 opened Feb 8, 2017 by michael-weinstein
4
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