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Makefile
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Makefile
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# Data dump files.
DUMP_FILE=export/database/db.json
# Backup file.
BACKUP_DUMP_FILE=export/database/db.backup.`date +'%Y-%m-%d-%H%M'`.json
# Default settings module.
DJANGO_SETTINGS_MODULE := biostar.recipes.settings
# Default app.
DJANGO_APP := biostar.recipes
# Database name
DATABASE_NAME := database.db
# Search index name
INDEX_NAME := index
# Search index directory
INDEX_DIR := search
# Recipes database to copy
COPY_DATABASE := recipes.db
all: recipes serve
accounts:
$(eval DJANGO_SETTINGS_MODULE := biostar.accounts.settings)
$(eval DJANGO_APP := biostar.accounts)
@echo DJANGO_SETTINGS_MODULE=${DJANGO_SETTINGS_MODULE}
@echo DJANGO_APP=${DJANGO_APP}
emailer:
$(eval DJANGO_SETTINGS_MODULE := biostar.emailer.settings)
$(eval DJANGO_APP := biostar.emailer)
@echo DJANGO_SETTINGS_MODULE=${DJANGO_SETTINGS_MODULE}
@echo DJANGO_APP=${DJANGO_APP}
pg:
$(eval DJANGO_SETTINGS_MODULE := conf.examples.pg.pg_settings)
@echo DJANGO_SETTINGS_MODULE=${DJANGO_SETTINGS_MODULE}
recipes:
$(eval DJANGO_SETTINGS_MODULE := biostar.recipes.settings)
$(eval DJANGO_APP := biostar.recipes)
$(eval UWSGI_INI := conf/uwsgi/engine_uwsgi.ini)
$(eval ANSIBLE_HOST := hosts/www.bioinformatics.recipes)
$(eval ANSIBLE_ROOT := conf/ansible)
$(eval SUPERVISOR_NAME := recipes)
$(eval ENGINE_DIR := /export/www/biostar-central)
@echo DJANGO_SETTINGS_MODULE=${DJANGO_SETTINGS_MODULE}
@echo DJANGO_APP=${DJANGO_APP}
@echo DATABASE_NAME=${DATABASE_NAME}
bioconductor:
$(eval DJANGO_SETTINGS_MODULE := themes.bioconductor.settings)
$(eval DJANGO_APP := biostar.forum)
$(eval UWSGI_INI := themes/bioconductor/conf/uwsgi.ini)
$(eval ANSIBLE_HOST := supportupgrade.bioconductor.org)
$(eval ANSIBLE_ROOT := themes/bioconductor/conf/ansible)
$(eval SUPERVISOR_NAME := forum)
$(eval ENGINE_DIR := /export/www/biostar-central)
@echo DJANGO_SETTINGS_MODULE=${DJANGO_SETTINGS_MODULE}
@echo DJANGO_APP=${DJANGO_APP}
@echo DATABASE_NAME=${DATABASE_NAME}
forum:
$(eval DJANGO_SETTINGS_MODULE := biostar.forum.settings)
$(eval DJANGO_APP := biostar.forum)
$(eval UWSGI_INI := conf/uwsgi/forum_uwsgi.ini)
$(eval ANSIBLE_HOST := hosts/test.biostars.org)
$(eval ANSIBLE_ROOT := conf/ansible)
$(eval SUPERVISOR_NAME := engine)
$(eval ENGINE_DIR := /export/www/biostar-engine)
@echo DJANGO_SETTINGS_MODULE=${DJANGO_SETTINGS_MODULE}
@echo DJANGO_APP=${DJANGO_APP}
@echo DATABASE_NAME=${DATABASE_NAME}
serve:
@echo DJANGO_SETTINGS_MODULE=${DJANGO_SETTINGS_MODULE}
python manage.py runserver --settings ${DJANGO_SETTINGS_MODULE}
init:
@echo DJANGO_SETTINGS_MODULE=${DJANGO_SETTINGS_MODULE}
python manage.py collectstatic --noinput -v 0 --settings ${DJANGO_SETTINGS_MODULE}
python manage.py migrate -v 0 --settings ${DJANGO_SETTINGS_MODULE}
load:
@echo DJANGO_SETTINGS_MODULE=${DJANGO_SETTINGS_MODULE}
python manage.py loaddata --ignorenonexistent --settings ${DJANGO_SETTINGS_MODULE} $(DUMP_FILE)
delete:
# Delete the database, logs and CACHE files.
# Keep media and spooler.
rm -rf export/logs/*.log
rm -f export/db/${DATABASE_NAME}
rm -rf export/static/CACHE
rm -rf *.egg
rm -rf *.egg-info
# Resets the site without removing jobs.
reset: delete init
# Initializes the test project.
copy: reset
@echo COPY_DATABASE=${COPY_DATABASE}
python manage.py copy --db ${COPY_DATABASE} --settings ${DJANGO_SETTINGS_MODULE}
test:
@echo DJANGO_SETTINGS_MODULE=${DJANGO_SETTINGS_MODULE}
@echo DJANGO_APP=${DJANGO_APP}
#python manage.py test ${DJANGO_APP} --settings ${DJANGO_SETTINGS_MODULE} -v 2 --failfast
coverage run manage.py test ${DJANGO_APP} --settings ${DJANGO_SETTINGS_MODULE} -v 2 --failfast
coverage html --skip-covered
test_all:
#python manage.py test --settings biostar.test.test_settings -v 2 --failfast
coverage run manage.py test --settings biostar.test.test_settings -v 2 --failfast
coverage html --skip-covered
test_pg:
#python manage.py test --settings biostar.test.pg_test_settings -v 2 --failfast
coverage run manage.py test --settings biostar.test.pg_test_settings -v 2 --failfast
coverage html --skip-covered
index:
@echo INDEX_NAME=${INDEX_NAME}
@echo DJANGO_SETTINGS_MODULE=${DJANGO_SETTINGS_MODULE}
python manage.py index --settings ${DJANGO_SETTINGS_MODULE} --index 130000 --report
reindex:
@echo INDEX_NAME=${INDEX_NAME}
@echo DJANGO_SETTINGS_MODULE=${DJANGO_SETTINGS_MODULE}
python manage.py index --remove --reset --index 3700000 --settings ${DJANGO_SETTINGS_MODULE}
recipes_demo: recipes reset init load_recipes serve
forum_demo: forum reset init load_forum serve
load_recipes:
python manage.py project --pid test --name "Test Project" --public
python manage.py recipe --pid test --rid hello --json biostar/recipes/recipes/hello-world.hjson
load_forum:
python manage.py populate --n_users 10 --n_posts 10 --settings ${DJANGO_SETTINGS_MODULE}
hard_reset: delete
# Delete media and spooler.
rm -rf export/spooler/*spool*
rm -rf export/media/*
dump:
@echo DJANGO_SETTINGS_MODULE=${DJANGO_SETTINGS_MODULE}
@echo DJANGO_APP=${DJANGO_APP}
python manage.py dumpdata --settings ${DJANGO_APP} --settings ${DJANGO_SETTINGS_MODULE} --exclude auth.permission --exclude contenttypes > $(DUMP_FILE)
@cp -f $(DUMP_FILE) $(BACKUP_DUMP_FILE)
@ls -1 export/database/*.json
uwsgi:
@echo DJANGO_SETTINGS_MODULE=${DJANGO_SETTINGS_MODULE}
@echo UWSGI_INI=${UWSGI_INI}
uwsgi --ini ${UWSGI_INI}
pg_drop: pg
dropdb --if-exists ${DATABASE_NAME}
createdb ${DATABASE_NAME}
transfer:
python manage.py migrate --settings conf.examples.pg.pg_settings
python manage.py transfer -n 300 --settings biostar.transfer.settings
next:
@echo DJANGO_SETTINGS_MODULE=${DJANGO_SETTINGS_MODULE}
python manage.py job --next --settings ${DJANGO_SETTINGS_MODULE}
config:
(cd ${ANSIBLE_ROOT} && ansible-playbook -i ${ANSIBLE_HOST} config.yml --extra-vars -v)
install:
(cd ${ANSIBLE_ROOT} && ansible-playbook -i ${ANSIBLE_HOST} install.yml --ask-become-pass --extra-vars -v)
deploy:
(cd ${ANSIBLE_ROOT} && ansible-playbook -i ${ANSIBLE_HOST} server-deploy.yml --ask-become-pass --extra-vars "supervisor_program=${SUPERVISOR_NAME} restart=True engine_dir=${ENGINE_DIR}" -v)