GitHub - ashotmarg/somalier_Nextflow

Branches Tags

Name		Name	Last commit message	Last commit date
Latest commit History 2 Commits
inputFiles.csv		inputFiles.csv
main.nf		main.nf
mainTest.nf		mainTest.nf
meta.yml		meta.yml
nextflow.config		nextflow.config
nextflow_module.config		nextflow_module.config
pytest_modules.yml		pytest_modules.yml
readMe		readMe
sites_chr21.hg38.vcf.gz		sites_chr21.hg38.vcf.gz
somalier_am_v0.2.16.sif		somalier_am_v0.2.16.sif
somalierextract-module.nf		somalierextract-module.nf
somalierrelate-module.nf		somalierrelate-module.nf
test.yml		test.yml
test_data.config		test_data.config

Repository files navigation

# run example singularity
PROFILE=singularity nextflow run ./main.nf -c ./nextflow.config -c ./nextflow_module.config --inputCsv inputFiles.csv

# run example docker
PROFILE=docker nextflow run ./main.nf -c ./nextflow.config -c ./nextflow_module.config --inputCsv inputFiles.csv