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update intervene's bedtools #33

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mortunco opened this issue May 4, 2020 · 2 comments
Closed

update intervene's bedtools #33

mortunco opened this issue May 4, 2020 · 2 comments

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@mortunco
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mortunco commented May 4, 2020

Hello,

I am having the exact issue below. When i update my bedtools, it solves the problem.

Is there a way to intagrate more updated version of the bedtools in intervene?

Thank you for developing and maintaining such an useful software.

Best,

T.

arq5x/bedtools#153
@Rohit-Satyam
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Hi! For me, conda version works fine with a little bit of version warning for matplotlib. Create a new environment in conda and install intervene using the command conda install -c bioconda intervene. This way you will not require to install bedtools separately.

Hope this helps!!
Cheers!!

asntech added a commit to bioconda/bioconda-recipes that referenced this issue Oct 12, 2020
@asntech
fixed asntech/intervene#33
2f228d4
BiocondaBot pushed a commit to bioconda/bioconda-recipes that referenced this issue Oct 13, 2020
@asntech
[ci skip] Merge PR 24800
df2a921 
Merge PR #24800, commits were: 
 * fixed asntech/intervene#33
 * bump build number
 * Fixed asntech/intervene#38
@asntech asntech closed this as completed Oct 14, 2020
@asntech
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asntech commented Oct 14, 2020

I've updated the conda recipe and set bedtools >=2.29.1. This would fix this. Thanks!

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@asntech @mortunco @Rohit-Satyam