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Add wilson dataset #11

Merged
merged 13 commits into from
Feb 21, 2020
Merged

Add wilson dataset #11

merged 13 commits into from
Feb 21, 2020

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GerbrichFerdinands
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Add dataset from systematic review on Wilson disease + preprocessing scripts.

Original dataset via:
Appenzeller-Herzog, C. (2020). Data from Comparative effectiveness of common therapies for Wilson disease: A systematic review and meta‐analysis of controlled studies. https://doi.org/10.5281/zenodo.3625931

Publication:
Appenzeller‐Herzog, C., Mathes, T., Heeres, M. L. S., Weiss, K. H., Houwen, R. H. J., & Ewald, H. (2019). Comparative effectiveness of common therapies for Wilson disease: A systematic review and meta-analysis of controlled studies. Liver International, 39(11), 2136–2152. https://doi.org/10.1111/liv.14179

@J535D165
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Thanks thanks thanks. Great to have this PR. I made a couple of changes to fix the issues with the RIS parsing. We can now bypass the Zotero step :) The README is now a bit outdated.

@J535D165
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J535D165 commented Feb 20, 2020

@terrymyc Please have a look at this PR. It might be useful for the other pipelines as well.

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Thanks! I'll take a look.

@GerbrichFerdinands
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Thank you for the nice adjustments!
And by the way thanks to @boer0107 for letting me know about this dataset!

@GerbrichFerdinands
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I updated the readme. Also, I noted label_included contains 1s and NaN's. I added a line to convert the NaN's into 0s. Might be a bit hacky though! Could you take a look @J535D165 ?

@J535D165 J535D165 merged commit 8f110a9 into asreview:master Feb 21, 2020
@J535D165
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Thanks, @GerbrichFerdinands. Teamwork and a great example to others ;)

Looking forward to seeing the simulation results of this dataset.

@Rensvandeschoot

@Rensvandeschoot
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Well done everyone!

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4 participants