Added fastqc2 template

assemblerflow · Jun 15, 2019 · 7a4575b · 7a4575b
1 parent 43d9ffd
commit 7a4575b
Showing 1 changed file with 23 additions and 0 deletions.
diff --git a/flowcraft/generator/templates/fastqc2.nf b/flowcraft/generator/templates/fastqc2.nf
@@ -0,0 +1,23 @@
+process fastqc2_{{ pid }} {
+
+    {% include "post.txt" ignore missing %}
+
+    tag { sample_id }
+    publishDir "results/fastqc2_{{ pid }}", mode: 'copy'
+
+    input:
+    set sample_id, file(fastq_pair) from {{ input_channel }}
+
+    output:
+    file "*_fastqc.{zip,html}" into {{ output_channel }}
+    {% with task_name="fastqc2" %}
+    {%- include "compiler_channels.txt" ignore missing -%}
+    {% endwith %}
+
+    script:
+    """
+    fastqc $fastq_pair
+    """
+}
+
+{{ forks }}