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Cannot install default profile #54

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taldcroft opened this issue Feb 14, 2013 · 5 comments
Closed

Cannot install default profile #54

taldcroft opened this issue Feb 14, 2013 · 5 comments
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@astrofrog

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@taldcroft
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I installed the latest astroquery master with python setup.py install to an astropy-rc1 virtualenv. I then got a warning upon import:

In [2]: import astroquery.simbad
WARNING: ConfigurationDefaultMissingWarning: Requested default configuration file 
/Users/aldcroft/vpy/astropy-rc1/lib/python2.7/site-packages/astroquery-0.0.dev226-
py2.7.egg/astroquery/astroquery.cfg is not a file. Cannot install default profile. If you are 
importing from source, this is expected. [astroquery]

I was not importing from source.
@astrofrog
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Can you install astroquery from a clean clone and let me know the full output? This is something I thought I'd fixed.

@ghost ghost assigned astrofrog Feb 14, 2013
@taldcroft
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Here you go. Fresh virtualenv, fresh astropy-rc1, fresh git clone astroquery:

(astropy-rc1)weevil$ python setup.py install
Freezing version number to astroquery/version.py
running install
install_dir /Users/aldcroft/vpy/astropy-rc1/lib/python2.7/site-packages/
running bdist_egg
running egg_info
creating astroquery.egg-info
writing requirements to astroquery.egg-info/requires.txt
writing astroquery.egg-info/PKG-INFO
writing top-level names to astroquery.egg-info/top_level.txt
writing dependency_links to astroquery.egg-info/dependency_links.txt
writing requirements to astroquery.egg-info/requires.txt
writing astroquery.egg-info/PKG-INFO
writing top-level names to astroquery.egg-info/top_level.txt
writing dependency_links to astroquery.egg-info/dependency_links.txt
writing manifest file 'astroquery.egg-info/SOURCES.txt'
reading manifest file 'astroquery.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching '*.pyx' under directory 'astroquery'
warning: no files found matching '*.c' under directory 'astroquery'
warning: no previously-included files found matching '*.pyc'
warning: no previously-included files found matching '*.o'
no previously-included directories found matching 'docs/_build'
no previously-included directories found matching 'build'
writing manifest file 'astroquery.egg-info/SOURCES.txt'
installing library code to build/bdist.macosx-10.5-x86_64/egg
running install_lib
running build_py
creating build
creating build/lib
creating build/lib/astroquery
copying astroquery/__init__.py -> build/lib/astroquery
copying astroquery/conftest.py -> build/lib/astroquery
copying astroquery/version.py -> build/lib/astroquery
creating build/lib/astroquery/besancon
copying astroquery/besancon/__init__.py -> build/lib/astroquery/besancon
copying astroquery/besancon/besancon.py -> build/lib/astroquery/besancon
copying astroquery/besancon/besancon_reader.py -> build/lib/astroquery/besancon
creating build/lib/astroquery/extern
copying astroquery/extern/__init__.py -> build/lib/astroquery/extern
creating build/lib/astroquery/irsa
copying astroquery/irsa/__init__.py -> build/lib/astroquery/irsa
copying astroquery/irsa/irsa.py -> build/lib/astroquery/irsa
creating build/lib/astroquery/magpis
copying astroquery/magpis/__init__.py -> build/lib/astroquery/magpis
copying astroquery/magpis/magpis.py -> build/lib/astroquery/magpis
creating build/lib/astroquery/ned
copying astroquery/ned/__init__.py -> build/lib/astroquery/ned
copying astroquery/ned/nedpy.py -> build/lib/astroquery/ned
creating build/lib/astroquery/nist
copying astroquery/nist/__init__.py -> build/lib/astroquery/nist
copying astroquery/nist/atomic_lines.py -> build/lib/astroquery/nist
creating build/lib/astroquery/nrao
copying astroquery/nrao/__init__.py -> build/lib/astroquery/nrao
copying astroquery/nrao/nrao_image_archive.py -> build/lib/astroquery/nrao
creating build/lib/astroquery/simbad
copying astroquery/simbad/__init__.py -> build/lib/astroquery/simbad
copying astroquery/simbad/sim_parameters.py -> build/lib/astroquery/simbad
copying astroquery/simbad/sim_queries.py -> build/lib/astroquery/simbad
copying astroquery/simbad/sim_result.py -> build/lib/astroquery/simbad
copying astroquery/simbad/sim_votable.py -> build/lib/astroquery/simbad
creating build/lib/astroquery/splatalogue
copying astroquery/splatalogue/__init__.py -> build/lib/astroquery/splatalogue
copying astroquery/splatalogue/splatalogue.py -> build/lib/astroquery/splatalogue
creating build/lib/astroquery/tests
copying astroquery/tests/__init__.py -> build/lib/astroquery/tests
copying astroquery/tests/test_besancon.py -> build/lib/astroquery/tests
copying astroquery/tests/test_irsa.py -> build/lib/astroquery/tests
copying astroquery/tests/test_magpis.py -> build/lib/astroquery/tests
copying astroquery/tests/test_ned.py -> build/lib/astroquery/tests
copying astroquery/tests/test_nist.py -> build/lib/astroquery/tests
copying astroquery/tests/test_nrao.py -> build/lib/astroquery/tests
copying astroquery/tests/test_simbad.py -> build/lib/astroquery/tests
copying astroquery/tests/test_ukidss.py -> build/lib/astroquery/tests
copying astroquery/tests/test_vizier.py -> build/lib/astroquery/tests
creating build/lib/astroquery/ukidss
copying astroquery/ukidss/__init__.py -> build/lib/astroquery/ukidss
copying astroquery/ukidss/ukidss.py -> build/lib/astroquery/ukidss
creating build/lib/astroquery/utils
copying astroquery/utils/__init__.py -> build/lib/astroquery/utils
copying astroquery/utils/progressbar.py -> build/lib/astroquery/utils
creating build/lib/astroquery/vizier
copying astroquery/vizier/__init__.py -> build/lib/astroquery/vizier
copying astroquery/vizier/vizier.py -> build/lib/astroquery/vizier
creating build/lib/astroquery/data
copying astroquery/data/README.rst -> build/lib/astroquery/data
generating default astroquery.cfg file
Generation of default configuration item failed! Stdout and stderr are shown below.
Stdout:
ERROR: ImportError: No module named bs4 [unknown]

Stderr:
Traceback (most recent call last):
  File "<string>", line 1, in <module>
  File "/Library/Frameworks/EPD64.framework/Versions/7.0/lib/python2.7/site-packages/astropy/config/configuration.py", line 625, in generate_all_config_items
    for cfgitem in get_config_items(nm).itervalues():
  File "/Library/Frameworks/EPD64.framework/Versions/7.0/lib/python2.7/site-packages/astropy/config/configuration.py", line 512, in get_config_items
    __import__(packageormod)
  File "/Users/aldcroft/astroquery/build/lib/astroquery/nist/__init__.py", line 1, in <module>
    from .atomic_lines import *
  File "/Users/aldcroft/astroquery/build/lib/astroquery/nist/atomic_lines.py", line 8, in <module>
    import bs4
ImportError: No module named bs4

creating build/bdist.macosx-10.5-x86_64
creating build/bdist.macosx-10.5-x86_64/egg
creating build/bdist.macosx-10.5-x86_64/egg/astroquery
copying build/lib/astroquery/__init__.py -> build/bdist.macosx-10.5-x86_64/egg/astroquery
copying build/lib/astroquery/__init__.pyc -> build/bdist.macosx-10.5-x86_64/egg/astroquery
creating build/bdist.macosx-10.5-x86_64/egg/astroquery/besancon
copying build/lib/astroquery/besancon/__init__.py -> build/bdist.macosx-10.5-x86_64/egg/astroquery/besancon
copying build/lib/astroquery/besancon/__init__.pyc -> build/bdist.macosx-10.5-x86_64/egg/astroquery/besancon
copying build/lib/astroquery/besancon/besancon.py -> build/bdist.macosx-10.5-x86_64/egg/astroquery/besancon
copying build/lib/astroquery/besancon/besancon.pyc -> build/bdist.macosx-10.5-x86_64/egg/astroquery/besancon
copying build/lib/astroquery/besancon/besancon_reader.py -> build/bdist.macosx-10.5-x86_64/egg/astroquery/besancon
copying build/lib/astroquery/besancon/besancon_reader.pyc -> build/bdist.macosx-10.5-x86_64/egg/astroquery/besancon
copying build/lib/astroquery/conftest.py -> build/bdist.macosx-10.5-x86_64/egg/astroquery
copying build/lib/astroquery/conftest.pyc -> build/bdist.macosx-10.5-x86_64/egg/astroquery
creating build/bdist.macosx-10.5-x86_64/egg/astroquery/data
copying build/lib/astroquery/data/README.rst -> build/bdist.macosx-10.5-x86_64/egg/astroquery/data
creating build/bdist.macosx-10.5-x86_64/egg/astroquery/extern
copying build/lib/astroquery/extern/__init__.py -> build/bdist.macosx-10.5-x86_64/egg/astroquery/extern
copying build/lib/astroquery/extern/__init__.pyc -> build/bdist.macosx-10.5-x86_64/egg/astroquery/extern
creating build/bdist.macosx-10.5-x86_64/egg/astroquery/irsa
copying build/lib/astroquery/irsa/__init__.py -> build/bdist.macosx-10.5-x86_64/egg/astroquery/irsa
copying build/lib/astroquery/irsa/__init__.pyc -> build/bdist.macosx-10.5-x86_64/egg/astroquery/irsa
copying build/lib/astroquery/irsa/irsa.py -> build/bdist.macosx-10.5-x86_64/egg/astroquery/irsa
copying build/lib/astroquery/irsa/irsa.pyc -> build/bdist.macosx-10.5-x86_64/egg/astroquery/irsa
creating build/bdist.macosx-10.5-x86_64/egg/astroquery/magpis
copying build/lib/astroquery/magpis/__init__.py -> build/bdist.macosx-10.5-x86_64/egg/astroquery/magpis
copying build/lib/astroquery/magpis/__init__.pyc -> build/bdist.macosx-10.5-x86_64/egg/astroquery/magpis
copying build/lib/astroquery/magpis/magpis.py -> build/bdist.macosx-10.5-x86_64/egg/astroquery/magpis
copying build/lib/astroquery/magpis/magpis.pyc -> build/bdist.macosx-10.5-x86_64/egg/astroquery/magpis
creating build/bdist.macosx-10.5-x86_64/egg/astroquery/ned
copying build/lib/astroquery/ned/__init__.py -> build/bdist.macosx-10.5-x86_64/egg/astroquery/ned
copying build/lib/astroquery/ned/__init__.pyc -> build/bdist.macosx-10.5-x86_64/egg/astroquery/ned
copying build/lib/astroquery/ned/nedpy.py -> build/bdist.macosx-10.5-x86_64/egg/astroquery/ned
copying build/lib/astroquery/ned/nedpy.pyc -> build/bdist.macosx-10.5-x86_64/egg/astroquery/ned
creating build/bdist.macosx-10.5-x86_64/egg/astroquery/nist
copying build/lib/astroquery/nist/__init__.py -> build/bdist.macosx-10.5-x86_64/egg/astroquery/nist
copying build/lib/astroquery/nist/__init__.pyc -> build/bdist.macosx-10.5-x86_64/egg/astroquery/nist
copying build/lib/astroquery/nist/atomic_lines.py -> build/bdist.macosx-10.5-x86_64/egg/astroquery/nist
copying build/lib/astroquery/nist/atomic_lines.pyc -> build/bdist.macosx-10.5-x86_64/egg/astroquery/nist
creating build/bdist.macosx-10.5-x86_64/egg/astroquery/nrao
copying build/lib/astroquery/nrao/__init__.py -> build/bdist.macosx-10.5-x86_64/egg/astroquery/nrao
copying build/lib/astroquery/nrao/nrao_image_archive.py -> build/bdist.macosx-10.5-x86_64/egg/astroquery/nrao
creating build/bdist.macosx-10.5-x86_64/egg/astroquery/simbad
copying build/lib/astroquery/simbad/__init__.py -> build/bdist.macosx-10.5-x86_64/egg/astroquery/simbad
copying build/lib/astroquery/simbad/sim_parameters.py -> build/bdist.macosx-10.5-x86_64/egg/astroquery/simbad
copying build/lib/astroquery/simbad/sim_queries.py -> build/bdist.macosx-10.5-x86_64/egg/astroquery/simbad
copying build/lib/astroquery/simbad/sim_result.py -> build/bdist.macosx-10.5-x86_64/egg/astroquery/simbad
copying build/lib/astroquery/simbad/sim_votable.py -> build/bdist.macosx-10.5-x86_64/egg/astroquery/simbad
creating build/bdist.macosx-10.5-x86_64/egg/astroquery/splatalogue
copying build/lib/astroquery/splatalogue/__init__.py -> build/bdist.macosx-10.5-x86_64/egg/astroquery/splatalogue
copying build/lib/astroquery/splatalogue/splatalogue.py -> build/bdist.macosx-10.5-x86_64/egg/astroquery/splatalogue
creating build/bdist.macosx-10.5-x86_64/egg/astroquery/tests
copying build/lib/astroquery/tests/__init__.py -> build/bdist.macosx-10.5-x86_64/egg/astroquery/tests
copying build/lib/astroquery/tests/test_besancon.py -> build/bdist.macosx-10.5-x86_64/egg/astroquery/tests
copying build/lib/astroquery/tests/test_irsa.py -> build/bdist.macosx-10.5-x86_64/egg/astroquery/tests
copying build/lib/astroquery/tests/test_magpis.py -> build/bdist.macosx-10.5-x86_64/egg/astroquery/tests
copying build/lib/astroquery/tests/test_ned.py -> build/bdist.macosx-10.5-x86_64/egg/astroquery/tests
copying build/lib/astroquery/tests/test_nist.py -> build/bdist.macosx-10.5-x86_64/egg/astroquery/tests
copying build/lib/astroquery/tests/test_nrao.py -> build/bdist.macosx-10.5-x86_64/egg/astroquery/tests
copying build/lib/astroquery/tests/test_simbad.py -> build/bdist.macosx-10.5-x86_64/egg/astroquery/tests
copying build/lib/astroquery/tests/test_ukidss.py -> build/bdist.macosx-10.5-x86_64/egg/astroquery/tests
copying build/lib/astroquery/tests/test_vizier.py -> build/bdist.macosx-10.5-x86_64/egg/astroquery/tests
creating build/bdist.macosx-10.5-x86_64/egg/astroquery/ukidss
copying build/lib/astroquery/ukidss/__init__.py -> build/bdist.macosx-10.5-x86_64/egg/astroquery/ukidss
copying build/lib/astroquery/ukidss/ukidss.py -> build/bdist.macosx-10.5-x86_64/egg/astroquery/ukidss
creating build/bdist.macosx-10.5-x86_64/egg/astroquery/utils
copying build/lib/astroquery/utils/__init__.py -> build/bdist.macosx-10.5-x86_64/egg/astroquery/utils
copying build/lib/astroquery/utils/__init__.pyc -> build/bdist.macosx-10.5-x86_64/egg/astroquery/utils
copying build/lib/astroquery/utils/progressbar.py -> build/bdist.macosx-10.5-x86_64/egg/astroquery/utils
copying build/lib/astroquery/utils/progressbar.pyc -> build/bdist.macosx-10.5-x86_64/egg/astroquery/utils
copying build/lib/astroquery/version.py -> build/bdist.macosx-10.5-x86_64/egg/astroquery
copying build/lib/astroquery/version.pyc -> build/bdist.macosx-10.5-x86_64/egg/astroquery
creating build/bdist.macosx-10.5-x86_64/egg/astroquery/vizier
copying build/lib/astroquery/vizier/__init__.py -> build/bdist.macosx-10.5-x86_64/egg/astroquery/vizier
copying build/lib/astroquery/vizier/vizier.py -> build/bdist.macosx-10.5-x86_64/egg/astroquery/vizier
byte-compiling build/bdist.macosx-10.5-x86_64/egg/astroquery/nrao/__init__.py to __init__.pyc
byte-compiling build/bdist.macosx-10.5-x86_64/egg/astroquery/nrao/nrao_image_archive.py to nrao_image_archive.pyc
byte-compiling build/bdist.macosx-10.5-x86_64/egg/astroquery/simbad/__init__.py to __init__.pyc
byte-compiling build/bdist.macosx-10.5-x86_64/egg/astroquery/simbad/sim_parameters.py to sim_parameters.pyc
byte-compiling build/bdist.macosx-10.5-x86_64/egg/astroquery/simbad/sim_queries.py to sim_queries.pyc
byte-compiling build/bdist.macosx-10.5-x86_64/egg/astroquery/simbad/sim_result.py to sim_result.pyc
byte-compiling build/bdist.macosx-10.5-x86_64/egg/astroquery/simbad/sim_votable.py to sim_votable.pyc
byte-compiling build/bdist.macosx-10.5-x86_64/egg/astroquery/splatalogue/__init__.py to __init__.pyc
byte-compiling build/bdist.macosx-10.5-x86_64/egg/astroquery/splatalogue/splatalogue.py to splatalogue.pyc
byte-compiling build/bdist.macosx-10.5-x86_64/egg/astroquery/tests/__init__.py to __init__.pyc
byte-compiling build/bdist.macosx-10.5-x86_64/egg/astroquery/tests/test_besancon.py to test_besancon.pyc
byte-compiling build/bdist.macosx-10.5-x86_64/egg/astroquery/tests/test_irsa.py to test_irsa.pyc
byte-compiling build/bdist.macosx-10.5-x86_64/egg/astroquery/tests/test_magpis.py to test_magpis.pyc
byte-compiling build/bdist.macosx-10.5-x86_64/egg/astroquery/tests/test_ned.py to test_ned.pyc
byte-compiling build/bdist.macosx-10.5-x86_64/egg/astroquery/tests/test_nist.py to test_nist.pyc
byte-compiling build/bdist.macosx-10.5-x86_64/egg/astroquery/tests/test_nrao.py to test_nrao.pyc
byte-compiling build/bdist.macosx-10.5-x86_64/egg/astroquery/tests/test_simbad.py to test_simbad.pyc
byte-compiling build/bdist.macosx-10.5-x86_64/egg/astroquery/tests/test_ukidss.py to test_ukidss.pyc
byte-compiling build/bdist.macosx-10.5-x86_64/egg/astroquery/tests/test_vizier.py to test_vizier.pyc
byte-compiling build/bdist.macosx-10.5-x86_64/egg/astroquery/ukidss/__init__.py to __init__.pyc
byte-compiling build/bdist.macosx-10.5-x86_64/egg/astroquery/ukidss/ukidss.py to ukidss.pyc
byte-compiling build/bdist.macosx-10.5-x86_64/egg/astroquery/vizier/__init__.py to __init__.pyc
byte-compiling build/bdist.macosx-10.5-x86_64/egg/astroquery/vizier/vizier.py to vizier.pyc
creating build/bdist.macosx-10.5-x86_64/egg/EGG-INFO
installing scripts to build/bdist.macosx-10.5-x86_64/egg/EGG-INFO/scripts
running install_scripts
running build_scripts
creating build/scripts-2.7
copying scripts/README.rst -> build/scripts-2.7
changing mode of build/scripts-2.7/README.rst from 644 to 755
creating build/bdist.macosx-10.5-x86_64/egg/EGG-INFO/scripts
copying build/scripts-2.7/README.rst -> build/bdist.macosx-10.5-x86_64/egg/EGG-INFO/scripts
changing mode of build/bdist.macosx-10.5-x86_64/egg/EGG-INFO/scripts/README.rst to 755
copying astroquery.egg-info/PKG-INFO -> build/bdist.macosx-10.5-x86_64/egg/EGG-INFO
copying astroquery.egg-info/SOURCES.txt -> build/bdist.macosx-10.5-x86_64/egg/EGG-INFO
copying astroquery.egg-info/dependency_links.txt -> build/bdist.macosx-10.5-x86_64/egg/EGG-INFO
copying astroquery.egg-info/not-zip-safe -> build/bdist.macosx-10.5-x86_64/egg/EGG-INFO
copying astroquery.egg-info/requires.txt -> build/bdist.macosx-10.5-x86_64/egg/EGG-INFO
copying astroquery.egg-info/top_level.txt -> build/bdist.macosx-10.5-x86_64/egg/EGG-INFO
creating dist
creating 'dist/astroquery-0.0.dev226-py2.7.egg' and adding 'build/bdist.macosx-10.5-x86_64/egg' to it
removing 'build/bdist.macosx-10.5-x86_64/egg' (and everything under it)
Processing astroquery-0.0.dev226-py2.7.egg
creating /Users/aldcroft/vpy/astropy-rc1/lib/python2.7/site-packages/astroquery-0.0.dev226-py2.7.egg
Extracting astroquery-0.0.dev226-py2.7.egg to /Users/aldcroft/vpy/astropy-rc1/lib/python2.7/site-packages
Adding astroquery 0.0.dev226 to easy-install.pth file
Installing README.rst script to /Users/aldcroft/vpy/astropy-rc1/bin

Installed /Users/aldcroft/vpy/astropy-rc1/lib/python2.7/site-packages/astroquery-0.0.dev226-py2.7.egg
Processing dependencies for astroquery==0.0.dev226
Searching for astropy==0.2rc1
Best match: astropy 0.2rc1
Adding astropy 0.2rc1 to easy-install.pth file

Using /Library/Frameworks/EPD64.framework/Versions/7.0/lib/python2.7/site-packages
Searching for numpy==1.6.2
Best match: numpy 1.6.2
numpy 1.6.2 is already the active version in easy-install.pth

Using /Library/Frameworks/EPD64.framework/Versions/7.0/lib/python2.7/site-packages
Finished processing dependencies for astroquery==0.0.dev226
(astropy-rc1)weevil$

@astrofrog
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Ah, this is the culprit:

ERROR: ImportError: No module named bs4 [unknown]

Stderr:
Traceback (most recent call last):
  File "<string>", line 1, in <module>
  File "/Library/Frameworks/EPD64.framework/Versions/7.0/lib/python2.7/site-packages/astropy/config/configuration.py", line 625, in generate_all_config_items
    for cfgitem in get_config_items(nm).itervalues():
  File "/Library/Frameworks/EPD64.framework/Versions/7.0/lib/python2.7/site-packages/astropy/config/configuration.py", line 512, in get_config_items
    __import__(packageormod)
  File "/Users/aldcroft/astroquery/build/lib/astroquery/nist/__init__.py", line 1, in <module>
    from .atomic_lines import *
  File "/Users/aldcroft/astroquery/build/lib/astroquery/nist/atomic_lines.py", line 8, in <module>
    import bs4
ImportError: No module named bs4

The bs4 import should probably be inside query_line_html to avoid import errors if the dependency is not installed (the config file generation needs to import all files, so it shouldn't trip up on optional dependencies).

@astrofrog
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I'm out of time for this week, so if someone else wants to fix this, please feel free to!

keflavich added a commit to keflavich/astroquery that referenced this issue Feb 14, 2013
@keflavich
address issue astropy#54 - import bs4 in function
3e0200d
@keflavich keflavich mentioned this issue Feb 14, 2013
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@keflavich
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I think that PR fixed this issue; reopen if that's not true.

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@keflavich @astrofrog @taldcroft