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OpenOmics/ervx
OpenOmics/ervx PublicEndogenous Retrovirus Expression Pipeline for Human and Mouse for use with bulk RNA
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QSAR_classification
QSAR_classification PublicUnregularized logistic regression, logistic with lasso, logistic with ridge, radial SVM, and random forests are used here to classify each of 1,055 molecules as biodegradable or not biodegradable b…
R
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cancerRNA_clustering
cancerRNA_clustering PublicI use unsupervised learning methods (PCA, Hierarchical Clustering, and K-means Clustering) to subgroup 801 cancer samples into one of 5 clusters based on their gene expression profiles, 20, 531 gen…
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OpenOmics/chrom-seek
OpenOmics/chrom-seek PublicAn awesome set of epigenetic pipelines for bulk cfChip-seq, ChIP-seq, and ATAC-seq
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