add --data-type arg #233
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| # Run installation checks | |
| name: install | |
| on: | |
| push: | |
| branches: [ main ] | |
| pull_request: | |
| branches: [ main ] | |
| jobs: | |
| install: | |
| runs-on: ubuntu-20.04 | |
| strategy: | |
| matrix: | |
| python-version: [3.9] | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| python -m pip install flake8 pytest pypandoc | |
| if [ -f requirements.txt ]; then pip install -r requirements.txt; fi | |
| - name: Install GWASpy | |
| run: | | |
| python setup.py sdist | |
| pip3 install dist/gwaspy* | |
| - name: Check modules | |
| run: | | |
| preimp_qc --help | |
| pca --help | |
| imputation --help | |
| phasing --help |