ORFViewer

This tool is only for graphical disaplay of ORFs and does not include ORF recognition (P.S., The purpose of doing this is to better display the results after ORF recognition :)).

For ORF identification, please refer to: https://github.com/atlasbioinfo/ORF-finder

Usage

//These parameters need to be self-defined in script.js
// You can design user input fields and use ORF-Finder to calculate the corresponding ORF information
// Then transfer the information into script.js

let geneLength=3075;
let orfInfo=[
    {"name":"ORF1","label":0,"beg":1,"end":3075},
    {"name":"ORF2","label":1,"beg":167,"end":313},
    {"name":"ORF3","label":1,"beg":386,"end":523},
    {"name":"ORF4","label":1,"beg":680,"end":772},
    {"name":"ORF5","label":1,"beg":1382,"end":1603},
    {"name":"ORF6","label":1,"beg":1736,"end":1813},
    {"name":"ORF7","label":1,"beg":2579,"end":2656},
    {"name":"ORF8","label":2,"beg":1554,"end":1634},
    {"name":"ORF9","label":2,"beg":2124,"end":2261},
    {"name":"ORF10","label":3,"beg":2770,"end":2973},
    {"name":"ORF11","label":3,"beg":2548,"end":2637},
    {"name":"ORF12","label":3,"beg":2299,"end":2535},
    {"name":"ORF13","label":3,"beg":2128,"end":2220},
    {"name":"ORF14","label":3,"beg":1687,"end":1845},
    {"name":"ORF15","label":3,"beg":874,"end":1188},
    {"name":"ORF16","label":3,"beg":532,"end":681},
    {"name":"ORF17","label":4,"beg":1938,"end":2249},
    {"name":"ORF18","label":4,"beg":1764,"end":1910},
    {"name":"ORF19","label":4,"beg":1404,"end":1562},
    {"name":"ORF20","label":5,"beg":440,"end":529}
]

Method

The graphical implementation of the ORFviewer is based on Echats.

Tools support graphical displays, toolbars, zooming and clicking events.

Visualize 6 ORF reading frames (+1, +2, +3, -1, -2 ,-3).

To-do

1. Add arrows to make the reading frame clearer