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ran 50000 iterations, seeing 3*50000 on traceplot. looks like chains were stacked together. this is wrong #49

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audrey-b opened this issue Mar 7, 2019 · 4 comments
Closed

ran 50000 iterations, seeing 3*50000 on traceplot. looks like chains were stacked together. this is wrong #49

audrey-b opened this issue Mar 7, 2019 · 4 comments
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@JustinJSlater

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@audrey-b
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audrey-b commented Mar 7, 2019

image
@audrey-b
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audrey-b commented Mar 7, 2019

If the function's input is already stacked, you can extract n.chains and split the values back into 3 chains.

@JustinJSlater
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image

I updated the function to fix this issue. I also added a thinning and color option. I have tested the function for re model with 1,3,5, or 7 chains and it works. If the user specifies a "funny" thinning number like thin=57, it should still work.

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Was there something that needed to be done to the density plot?

@audrey-b
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Nope the density plot is fine.

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