Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Update develop branch to 0.0.2 release #17

Merged
merged 40 commits into from
Nov 1, 2019
Merged
Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
40 commits
Select commit Hold shift + click to select a range
e56483a
Merge pull request #1 from urbanmatthias/feature/example_fix
mlindauer Jan 11, 2019
aa939eb
fixed Precdict() crashes on CPU
urbanmatthias Jan 25, 2019
e95bb7f
More descriptive errors on autonet misconfiguration
urbanmatthias Jan 26, 2019
d7a0f1c
check max_runtime >= max_budget when budget type is time
urbanmatthias Jan 26, 2019
45faad5
added AutoNetEnsemble + PowerTransformer + Weight Initialization Stra…
urbanmatthias Feb 11, 2019
e3f1414
Better error message when no model is fit due to max_runtime being to…
urbanmatthias Feb 11, 2019
5cc3bb1
Update LICENSE
mlindauer Mar 26, 2019
d1d41cd
ensemble update
urbanmatthias Apr 6, 2019
2082bc1
minor
urbanmatthias Apr 6, 2019
f70e84e
updated requirements
urbanmatthias Apr 6, 2019
2545193
added more metrics to default pipeline
urbanmatthias Apr 6, 2019
c5f2628
readme up
urbanmatthias Apr 6, 2019
e326bcb
Merge branch 'master' of https://github.com/automl/Auto-PyTorch
urbanmatthias Apr 6, 2019
460f8d6
Merge branch 'develop'
urbanmatthias Apr 6, 2019
84c9c0b
removed obsolete files
urbanmatthias Apr 6, 2019
472618e
Merge branch 'develop'
urbanmatthias Apr 6, 2019
f65d334
Update README.md
mlindauer Apr 9, 2019
7b92f55
pass dataset instead of dataset info to autonet.get_hyperparameter_se…
urbanmatthias Apr 14, 2019
b69a271
Merge branch 'master' of https://github.com/automl/Auto-PyTorch
urbanmatthias Apr 14, 2019
33403a8
small fix when calling get_hyperparameter_search_space()
urbanmatthias Apr 14, 2019
3cb7446
renamed train_metric to optimize_metric
urbanmatthias May 4, 2019
b15963e
API documentation
urbanmatthias May 13, 2019
6996050
Update README.md
mlindauer Jun 27, 2019
b3d5fee
Auto-PyTorch 0.0.2 Release
Oct 7, 2019
f70ebf6
Small bugfixes
Oct 8, 2019
a54c9b5
Moved logs from "info" to "debug"
Oct 8, 2019
62412cd
Fixing maximum amount of datasets to 10
Oct 8, 2019
a1ea8a4
Clarifications
Oct 8, 2019
c0451c3
Clarifications in the tutorial
Oct 8, 2019
79bce9a
Notebook updates
Oct 9, 2019
eed5954
Added infos for config options
Oct 9, 2019
3d9ff6e
Added help for Configoptions
Oct 9, 2019
18ad0d2
Notebook output added, small fixes
Oct 9, 2019
a8bc0eb
Added cross-entropy as optimization metric
Oct 9, 2019
7408d24
Update README
Oct 9, 2019
8cd4e0e
Update README
Oct 9, 2019
feaef4f
Merge pull request #15 from automl/release_0.0.2
LMZimmer Oct 9, 2019
ef8925f
Update setup.py and setup.cfg for pypi release
Oct 11, 2019
50d8969
Updated license classifier for pypi
Oct 15, 2019
6b62a8d
Preparation for develop merge
Nov 1, 2019
File filter

Filter by extension

Filter by extension


Conversations
Failed to load comments.
Jump to
Jump to file
Failed to load files.
Diff view
Diff view
22 changes: 15 additions & 7 deletions .gitignore
Original file line number Diff line number Diff line change
@@ -1,13 +1,13 @@

# Visual Studio
*.vs/*

# Visual Studio Code
*.vscode/*

# Python
*__pycache__/
*__pycache__*
*.pyc
.ipynb_checkpoints*

# Zipped
*.tar.gz
Expand All @@ -24,19 +24,27 @@ results.json
outputs/
jobs.txt
.pylintrc
*worker_logs*

# Build
*build/
*autonet.egg-info
*autoPyTorch.egg-info
*.simg


# Datasets
/datasets/
.DS_Store
dist/

# Meta GPU
*meta_logs/
runs.log
runs.log.lock
logs/

# ensemble data
predictions_for_ensemble.npy
test_predictions_for_ensemble.npy

# testing
tests.ipynb

# venv
env/
201 changes: 194 additions & 7 deletions LICENSE
Original file line number Diff line number Diff line change
@@ -1,14 +1,201 @@
Copyright 2018 AutoML Freiburg
(contributions by Max Dippel, Michael Burkart, Matthias Urban and Marius Lindauer)
Apache License
Version 2.0, January 2004
http://www.apache.org/licenses/

Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met:
TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION

1. Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer.
1. Definitions.

2. Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution.
"License" shall mean the terms and conditions for use, reproduction,
and distribution as defined by Sections 1 through 9 of this document.

3. Neither the name of the copyright holder nor the names of its contributors may be used to endorse or promote products derived from this software without specific prior written permission.
"Licensor" shall mean the copyright owner or entity authorized by
the copyright owner that is granting the License.

THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
"Legal Entity" shall mean the union of the acting entity and all
other entities that control, are controlled by, or are under common
control with that entity. For the purposes of this definition,
"control" means (i) the power, direct or indirect, to cause the
direction or management of such entity, whether by contract or
otherwise, or (ii) ownership of fifty percent (50%) or more of the
outstanding shares, or (iii) beneficial ownership of such entity.

"You" (or "Your") shall mean an individual or Legal Entity
exercising permissions granted by this License.

"Source" form shall mean the preferred form for making modifications,
including but not limited to software source code, documentation
source, and configuration files.

"Object" form shall mean any form resulting from mechanical
transformation or translation of a Source form, including but
not limited to compiled object code, generated documentation,
and conversions to other media types.

"Work" shall mean the work of authorship, whether in Source or
Object form, made available under the License, as indicated by a
copyright notice that is included in or attached to the work
(an example is provided in the Appendix below).

"Derivative Works" shall mean any work, whether in Source or Object
form, that is based on (or derived from) the Work and for which the
editorial revisions, annotations, elaborations, or other modifications
represent, as a whole, an original work of authorship. For the purposes
of this License, Derivative Works shall not include works that remain
separable from, or merely link (or bind by name) to the interfaces of,
the Work and Derivative Works thereof.

"Contribution" shall mean any work of authorship, including
the original version of the Work and any modifications or additions
to that Work or Derivative Works thereof, that is intentionally
submitted to Licensor for inclusion in the Work by the copyright owner
or by an individual or Legal Entity authorized to submit on behalf of
the copyright owner. For the purposes of this definition, "submitted"
means any form of electronic, verbal, or written communication sent
to the Licensor or its representatives, including but not limited to
communication on electronic mailing lists, source code control systems,
and issue tracking systems that are managed by, or on behalf of, the
Licensor for the purpose of discussing and improving the Work, but
excluding communication that is conspicuously marked or otherwise
designated in writing by the copyright owner as "Not a Contribution."

"Contributor" shall mean Licensor and any individual or Legal Entity
on behalf of whom a Contribution has been received by Licensor and
subsequently incorporated within the Work.

2. Grant of Copyright License. Subject to the terms and conditions of
this License, each Contributor hereby grants to You a perpetual,
worldwide, non-exclusive, no-charge, royalty-free, irrevocable
copyright license to reproduce, prepare Derivative Works of,
publicly display, publicly perform, sublicense, and distribute the
Work and such Derivative Works in Source or Object form.

3. Grant of Patent License. Subject to the terms and conditions of
this License, each Contributor hereby grants to You a perpetual,
worldwide, non-exclusive, no-charge, royalty-free, irrevocable
(except as stated in this section) patent license to make, have made,
use, offer to sell, sell, import, and otherwise transfer the Work,
where such license applies only to those patent claims licensable
by such Contributor that are necessarily infringed by their
Contribution(s) alone or by combination of their Contribution(s)
with the Work to which such Contribution(s) was submitted. If You
institute patent litigation against any entity (including a
cross-claim or counterclaim in a lawsuit) alleging that the Work
or a Contribution incorporated within the Work constitutes direct
or contributory patent infringement, then any patent licenses
granted to You under this License for that Work shall terminate
as of the date such litigation is filed.

4. Redistribution. You may reproduce and distribute copies of the
Work or Derivative Works thereof in any medium, with or without
modifications, and in Source or Object form, provided that You
meet the following conditions:

(a) You must give any other recipients of the Work or
Derivative Works a copy of this License; and

(b) You must cause any modified files to carry prominent notices
stating that You changed the files; and

(c) You must retain, in the Source form of any Derivative Works
that You distribute, all copyright, patent, trademark, and
attribution notices from the Source form of the Work,
excluding those notices that do not pertain to any part of
the Derivative Works; and

(d) If the Work includes a "NOTICE" text file as part of its
distribution, then any Derivative Works that You distribute must
include a readable copy of the attribution notices contained
within such NOTICE file, excluding those notices that do not
pertain to any part of the Derivative Works, in at least one
of the following places: within a NOTICE text file distributed
as part of the Derivative Works; within the Source form or
documentation, if provided along with the Derivative Works; or,
within a display generated by the Derivative Works, if and
wherever such third-party notices normally appear. The contents
of the NOTICE file are for informational purposes only and
do not modify the License. You may add Your own attribution
notices within Derivative Works that You distribute, alongside
or as an addendum to the NOTICE text from the Work, provided
that such additional attribution notices cannot be construed
as modifying the License.

You may add Your own copyright statement to Your modifications and
may provide additional or different license terms and conditions
for use, reproduction, or distribution of Your modifications, or
for any such Derivative Works as a whole, provided Your use,
reproduction, and distribution of the Work otherwise complies with
the conditions stated in this License.

5. Submission of Contributions. Unless You explicitly state otherwise,
any Contribution intentionally submitted for inclusion in the Work
by You to the Licensor shall be under the terms and conditions of
this License, without any additional terms or conditions.
Notwithstanding the above, nothing herein shall supersede or modify
the terms of any separate license agreement you may have executed
with Licensor regarding such Contributions.

6. Trademarks. This License does not grant permission to use the trade
names, trademarks, service marks, or product names of the Licensor,
except as required for reasonable and customary use in describing the
origin of the Work and reproducing the content of the NOTICE file.

7. Disclaimer of Warranty. Unless required by applicable law or
agreed to in writing, Licensor provides the Work (and each
Contributor provides its Contributions) on an "AS IS" BASIS,
WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or
implied, including, without limitation, any warranties or conditions
of TITLE, NON-INFRINGEMENT, MERCHANTABILITY, or FITNESS FOR A
PARTICULAR PURPOSE. You are solely responsible for determining the
appropriateness of using or redistributing the Work and assume any
risks associated with Your exercise of permissions under this License.

8. Limitation of Liability. In no event and under no legal theory,
whether in tort (including negligence), contract, or otherwise,
unless required by applicable law (such as deliberate and grossly
negligent acts) or agreed to in writing, shall any Contributor be
liable to You for damages, including any direct, indirect, special,
incidental, or consequential damages of any character arising as a
result of this License or out of the use or inability to use the
Work (including but not limited to damages for loss of goodwill,
work stoppage, computer failure or malfunction, or any and all
other commercial damages or losses), even if such Contributor
has been advised of the possibility of such damages.

9. Accepting Warranty or Additional Liability. While redistributing
the Work or Derivative Works thereof, You may choose to offer,
and charge a fee for, acceptance of support, warranty, indemnity,
or other liability obligations and/or rights consistent with this
License. However, in accepting such obligations, You may act only
on Your own behalf and on Your sole responsibility, not on behalf
of any other Contributor, and only if You agree to indemnify,
defend, and hold each Contributor harmless for any liability
incurred by, or claims asserted against, such Contributor by reason
of your accepting any such warranty or additional liability.

END OF TERMS AND CONDITIONS

APPENDIX: How to apply the Apache License to your work.

To apply the Apache License to your work, attach the following
boilerplate notice, with the fields enclosed by brackets "[]"
replaced with your own identifying information. (Don't include
the brackets!) The text should be enclosed in the appropriate
comment syntax for the file format. We also recommend that a
file or class name and description of purpose be included on the
same "printed page" as the copyright notice for easier
identification within third-party archives.

Copyright [2019] The Contributors

Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at

http://www.apache.org/licenses/LICENSE-2.0

Unless required by applicable law or agreed to in writing, software
distributed under the License is distributed on an "AS IS" BASIS,
WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
See the License for the specific language governing permissions and
limitations under the License.
19 changes: 12 additions & 7 deletions README.md
Original file line number Diff line number Diff line change
@@ -1,9 +1,9 @@
# Auto-PyTorch

Copyright (C) 2018 [AutoML Group](http://www.automl.org/)
Copyright (C) 2019 [AutoML Group Freiburg](http://www.automl.org/)

This a very early pre-alpha version of our upcoming Auto-PyTorch.
So far, Auto-PyTorch only supports featurized data.
So far, Auto-PyTorch supports featurized data (classification, regression) and image data (classification).

## Installation

Expand Down Expand Up @@ -33,6 +33,8 @@ $ python setup.py install

## Examples

For a detailed tutorial, please refer to the jupyter notebook in https://github.com/automl/Auto-PyTorch/tree/master/examples/basics.

In a nutshell:

```py
Expand Down Expand Up @@ -95,7 +97,8 @@ autoPyTorch = AutoNetClassification(networks=["resnet", "shapedresnet", "mlpnet"
# Each hyperparameter belongs to a node in Auto-PyTorch's ML Pipeline.
# The names of the hyperparameters are prefixed with the name of the node: NodeName:hyperparameter_name.
# If a hyperparameter belongs to a component: NodeName:component_name:hyperparameter_name.
autoPyTorch.get_hyperparameter_search_space()
# Call with the same arguments as fit.
autoPyTorch.get_hyperparameter_search_space(X_train, y_train, validation_split=0.3)

# You can configure the search space of every hyperparameter of every component:
from autoPyTorch import HyperparameterSearchSpaceUpdates
Expand All @@ -111,7 +114,7 @@ search_space_updates.append(node_name="NetworkSelector",
autoPyTorch = AutoNetClassification(hyperparameter_search_space_updates=search_space_updates)
```

Enable ensemble building:
Enable ensemble building (for featurized data):

```py
from autoPyTorch import AutoNetEnsemble
Expand All @@ -129,15 +132,14 @@ autoPyTorch = AutoNetClassification("tiny_cs", log_level='info', max_runtime=300
## License

This program is free software: you can redistribute it and/or modify
it under the terms of the 3-clause BSD license (please see the LICENSE file).
it under the terms of the Apache license 2.0 (please see the LICENSE file).

This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

You should have received a copy of the 3-clause BSD license
You should have received a copy of the Apache license 2.0
along with this program (see LICENSE file).
If not, see <https://opensource.org/licenses/BSD-3-Clause>.

## Reference

Expand All @@ -156,6 +158,9 @@ If not, see <https://opensource.org/licenses/BSD-3-Clause>.
}
```

**Note**: Previously, the name of the project was AutoNet. Since this was too generic, we changed the name to AutoPyTorch. AutoNet 2.0 in the reference mention above is indeed AutoPyTorch.


## Contact

Auto-PyTorch is developed by the [AutoML Group of the University of Freiburg](http://www.automl.org/).
3 changes: 2 additions & 1 deletion autoPyTorch/__init__.py
Original file line number Diff line number Diff line change
Expand Up @@ -2,6 +2,7 @@
hpbandster = os.path.abspath(os.path.join(__file__, '..', '..', 'submodules', 'HpBandSter'))
sys.path.append(hpbandster)

from autoPyTorch.core.autonet_classes import AutoNetClassification, AutoNetMultilabel, AutoNetRegression
from autoPyTorch.core.autonet_classes import AutoNetClassification, AutoNetMultilabel, AutoNetRegression, AutoNetImageClassification, AutoNetImageClassificationMultipleDatasets
from autoPyTorch.data_management.data_manager import DataManager
from autoPyTorch.utils.hyperparameter_search_space_update import HyperparameterSearchSpaceUpdates
from autoPyTorch.core.ensemble import AutoNetEnsemble
2 changes: 2 additions & 0 deletions autoPyTorch/components/ensembles/abstract_ensemble.py
Original file line number Diff line number Diff line change
Expand Up @@ -2,6 +2,8 @@


class AbstractEnsemble(object):
"""Ensemble interface extracted from auto-sklearn"""

__metaclass__ = ABCMeta

@abstractmethod
Expand Down