chore: update ruff params according to warning message

[mndeveci]

Which issue(s) does this change fix?

N/A

Why is this change necessary?

Running make lint is giving following warning message;

warning: `ruff <path>` is deprecated. Use `ruff check <path>` instead.
warning: The top-level linter settings are deprecated in favour of their counterparts in the `lint` section. Please update the following options in `pyproject.toml`:
  - 'ignore' -> 'lint.ignore'
  - 'select' -> 'lint.select'
  - 'pylint' -> 'lint.pylint'
  - 'per-file-ignores' -> 'lint.per-file-ignores'

How does it address the issue?

Updates ruff command and its configuration accordingly

What side effects does this change have?

N/A

Mandatory Checklist

PRs will only be reviewed after checklist is complete

• Add input/output type hints to new functions/methods
• Write design document if needed (Do I need to write a design document?)
• Write/update unit tests
• Write/update integration tests
• Write/update functional tests if needed
• make pr passes
• make update-reproducible-reqs if dependencies were changed
• Write documentation

By submitting this pull request, I confirm that my contribution is made under the terms of the Apache 2.0 license.