DNA MTP degranulation signal averaging

Jupyter notebook in reference to "Imaging analysis" from Mechanically active integrins direct cytotoxic secretion at the immune synapse.

See average_signals.ipynb for example analysis.

To run notebook:

• Install miniconda and git if you haven't
• Clone this repo with git clone
• Create conda environment with conda env create -f environment.yml
• Activate environment with conda activate image_py3
• jupyter lab at the directory, be mindful of data paths if you want to use other data sets that are not in data folder.

Files:

• average_signals.ipynb - Jupyter notebook with code explaining how to obtain aligned averages.
• environment.yml - conda environment file, list of dependencies needed to run jupyter notebook.
• data - folder containing example data
• outputs - folder with averages saved as csv file