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SDePER v1.2.0
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@az7jh2 az7jh2 released this 28 Apr 05:23
· 5 commits to main since this release
v1.2.0
3066a2d

Updates:

  • Revised the cvae module, implementing several updates including (#4):

    • Integration of Batch Normalization into the CVAE training process.

    • Inclusion of a logarithmic transformation in the preprocessing of gene expression data for CVAE input.

    • Generation of “pseudo-spots” under spatial conditions through the random combination of spatial spots.

    • Addition of two command-line options: --n_pseudo_spot and --num_hidden_layer. Also adjusted the default value of --cvae_init_lr.

  • Relocated all code related to generating diagnostic figures to a new module, diagnosis_plots. Additionally organized the output figures into a folder named diagnosis within the output path (#6).

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