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Seems the validation accuracy in the score.json file is the accuracy evaluated on the no_boundary ground truth, while the validation accuracy in the log.txt file is the accuracy evaluated on the full reference.
This is true. Ideally the numbers would be the same, but I don't think this should cause any problems as long as you are aware that the numbers are computed differently. If you want to submit a PR for this, feel free.
Validation accuracy in the score.json is different from it in the log.txt/stdout.txt.
BTW, the avg_accuracy in the validation_eval.py should be called overall_accuracy.
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