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R scripts used in the Swish paper

  • check_perf.R - used for the one and two batch bulk RNA-seq simulation
  • samp_size.R - used for the one batch bulk RNA-seq with varying sample size
  • highrep - directory with scripts used in the high replicate bulk RNA-seq analysis
  • scrna - directory with scripts used in the mouse neurons scRNA-seq
  • splatter-polyester - directory with scripts used in the splatter-polyester scRNA-seq simulation
  • hist_plot.R - used to create the histograms in Fig 1

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R code for 'swish' paper

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