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SO-2127 snomed rf2 importer issues #122

Merged
merged 30 commits into from
Jan 6, 2017

Commits on Nov 24, 2016

  1. SO-2127: fixing issues with RF2 importer

    Clear unnecessary allocated data when after validator.doValidate().
    Validate Stated Relationships file instead of validating Relationships
    file twice.
    Report errors to a files instead of console.
    Report taxonomy errors by effective time.
    Allow unpublished components to be imported from FULL RF2 files.
    cmark committed Nov 24, 2016
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Commits on Nov 25, 2016

  1. SO-1782: store taxonomy defect information in data objects...

    ...instead of Strings
    
    Add writeTo(Writer) method to SnomedValidationDefect.
    cmark committed Nov 25, 2016
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Commits on Dec 6, 2016

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  3. SO-2127: improve performance of in-memory ID service

    Bulk ID operations will load documents in bulk instead of one by one
    before executing the operation.
    cmark committed Dec 6, 2016
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  4. SO-2127: extract relevant taxonomy information for nodes and edges...

    ...instead of referencing variable from anonym class.
    
    This will ensure that only relevant information from the RF2 rows will
    be kept in memory and not the entire row.
    cmark committed Dec 6, 2016
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  6. SO-2127: refactor RF2 importer to support batch processing

    Component importers will read RF2 rows until they reach the specified
    threshold (50000 atm) and then start processing them instead of
    processing the rows one by one. This way the importer will execute way
    more less index lookups than before (single index query per 50000 rows
    to get the current revision).
    cmark committed Dec 6, 2016
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Commits on Dec 7, 2016

  1. Merge remote-tracking branch 'origin/develop' into issue/SO-2127-snom…

    …ed-rf2-importer-issues
    cmark committed Dec 7, 2016
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  4. SO-2127: run index purge/optimize before creating version...

    ...for the last imported RF2 effective time
    cmark committed Dec 7, 2016
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Commits on Dec 8, 2016

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  3. SO-2127: remove temporary resource form lang. refset importer

    Fetch Description objects by storageKey and attach new members to lang
    members list directly instead of hacking with low-level revision
    objects.
    cmark committed Dec 8, 2016
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Commits on Dec 9, 2016

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Commits on Jan 4, 2017

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Commits on Jan 5, 2017

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