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Experiments and exporting the prior biological knowledge information steps are shared in 'project_bash.sh' file.
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Figures, shared in paper and supplementary files, can be created by using notebooks in 'SigPrimedNet_figures' folder.
├── environment.yml <- The environment file
│
├── README.md <- The top-level README for developers using this project.
│
├── project_bash.sh <- All experiments and exporting the prior biological knowledge information steps
│
├── data
│ ├── external <- Data from third party sources.
│ ├── processed <- The final, canonical data sets for modeling.
│ └── raw <- The original, immutable data dump.
│
├── notebooks <- Jupyter notebooks. Naming convention is a number (for ordering),
│ the creator's initials, and a short `-` delimited description,
│ e.g. `1.0-jqp-initial-data-exploration`
│
├── references <- Data dictionaries, manuals, and all other explanatory materials
│
├── SigPrimedNet_figures <- Jupyter notebooks, which create all figure in paper and supplementary file.
│
└── scripts <- helper scripts
Project based on the cookiecutter data science project template. #cookiecutterdatascience