Bacterial Genomics
Popular repositories
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genomics_scripts
genomics_scripts Publicmiscellaneous genomics scripts for fetching, parsing, and summarizing genomic data
Python 3
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wf-assembly-snps
wf-assembly-snps Publicgeneral workflow for genome assembly-based SNP phylogeny with optional recombination masking
Nextflow 2
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wf-paired-end-illumina-assembly
wf-paired-end-illumina-assembly Publicpathogen agnostic general workflow for genome assembly of Illumina paired-end sequence data
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leptospira_type_strains
leptospira_type_strains Publicsummary data, scripts, and workflows for all species type strains in the bacterial genus Leptospira
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test-datasets
test-datasets PublicForked from nf-core/test-datasets
Test data to be used for automated testing with the nf-core pipelines
Repositories
- bacterial-genomics.github.io Public
- wf-paired-end-illumina-assembly Public
pathogen agnostic general workflow for genome assembly of Illumina paired-end sequence data
- wf-assembly-snps Public
general workflow for genome assembly-based SNP phylogeny with optional recombination masking
- test-datasets Public Forked from nf-core/test-datasets
Test data to be used for automated testing with the nf-core pipelines
- bacterial-genomics.io Public
- leptospira_type_strains Public
summary data, scripts, and workflows for all species type strains in the bacterial genus Leptospira
- genomics_scripts Public
miscellaneous genomics scripts for fetching, parsing, and summarizing genomic data
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