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Bactopia

Nextflow DSL2 pipeline for the complete analysis of bacterial genomes

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  1. bactopia bactopia Public

    A flexible pipeline for complete analysis of bacterial genomes

    Nextflow 382 67

  2. bactopia-py bactopia-py Public

    A Python package for working with Bactopia

    Python 6 1

  3. bactopia-tests bactopia-tests Public

    Contains data used by Bactopia for testing.

    Standard ML 4 1

  4. bactopia-assembler bactopia-assembler Public

    The assembly process used by Bactopia.

    Shell 3

  5. bactopia.github.io bactopia.github.io Public

    Bactopia Documentation

    Jinja 2 8

  6. bactopia-workshop bactopia-workshop Public

    A workshop on getting started with Bactopia

    2 1

Repositories

Showing 10 of 16 repositories
  • bactopia Public

    A flexible pipeline for complete analysis of bacterial genomes

    bactopia/bactopia’s past year of commit activity
    Nextflow 382 MIT 67 72 0 Updated Jul 17, 2024
  • bactopia.github.io Public

    Bactopia Documentation

    bactopia/bactopia.github.io’s past year of commit activity
    Jinja 2 MIT 8 0 0 Updated Jun 28, 2024
  • bactopia-teton Public

    The taxonomic classification process used by Bactopia.

    bactopia/bactopia-teton’s past year of commit activity
    Python 0 MIT 0 0 0 Updated May 31, 2024
  • bactopia-py Public

    A Python package for working with Bactopia

    bactopia/bactopia-py’s past year of commit activity
    Python 6 MIT 1 0 0 Updated Apr 30, 2024
  • bactopia-mqc Public Forked from MultiQC/MultiQC

    Aggregate results from bioinformatics analyses across many samples into a single report.

    bactopia/bactopia-mqc’s past year of commit activity
    JavaScript 0 GPL-3.0 594 0 0 Updated Mar 29, 2024
  • bactopia-assembler Public

    The assembly process used by Bactopia.

    bactopia/bactopia-assembler’s past year of commit activity
    Shell 3 MIT 0 0 0 Updated Mar 24, 2024
  • bactopia-variants Public

    The SNP and InDel process used by Bactopia

    bactopia/bactopia-variants’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Mar 15, 2024
  • bactopia-tests Public

    Contains data used by Bactopia for testing.

    bactopia/bactopia-tests’s past year of commit activity
    Standard ML 4 MIT 1 0 0 Updated Mar 6, 2024
  • bactopia-sketcher Public

    Methods used by Bactopia for minmer sketching

    bactopia/bactopia-sketcher’s past year of commit activity
    Shell 0 MIT 0 0 0 Updated Oct 3, 2023
  • bactopia-qc Public

    The methods used in Bactopia for read QC

    bactopia/bactopia-qc’s past year of commit activity
    Shell 0 MIT 0 0 0 Updated Aug 11, 2023
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