/
params.json
47 lines (47 loc) · 1.83 KB
/
params.json
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{
"$schema": "http://json-schema.org/draft-07/schema",
"$id": "https://raw.githubusercontent.com/bactopia/bactopia/master/modules/nf-core/gtdbtk/setupdb/params.json",
"title": "GTDB Setup Module",
"description": "Identify marker genes and assign taxonomic classifications",
"type": "object",
"definitions": {
"gtdb_setup_parameters": {
"title": "GTDB Setup Parameters",
"type": "object",
"description": "",
"default": "",
"fa_icon": "fas fa-exclamation-circle",
"properties": {
"gtdb": {
"type": "string",
"description": "Tarball or path of a GTDB database. If a database is not found, you must use '--download_gtdb'",
"fa_icon": "fas fa-expand-arrows-alt",
"is_required": true
},
"download_gtdb": {
"type": "boolean",
"default": false,
"description": "Download the latest GTDB database, even it exists",
"fa_icon": "fas fa-expand-arrows-alt"
},
"gtdb_save_as_tarball": {
"type": "boolean",
"default": false,
"description": "Download the latest GTDB database, and save it in a single tarball",
"fa_icon": "fas fa-expand-arrows-alt"
},
"skip_check": {
"type": "boolean",
"default": false,
"description": "Do not check the installation of GTDB database",
"fa_icon": "fas fa-expand-arrows-alt"
}
}
}
},
"allOf": [
{
"$ref": "#/definitions/gtdb_setup_parameters"
}
]
}