Software supplement for "SCRaMbLE generates designed combinatorial stochastic diversity in synthetic chromosomes", 2016 Genome Research, available here: https://genome.cshlp.org/content/26/1/36.full.
This software implements the analysis described in the publication and generates the figures presented in the publication.
- SynGenoR.v1.0: synthetic genome reconstruction by analysis of loxPsym junctions
- SCRaMbLE_figures: statistical analysis and figures
- Joel Bader, Johns Hopkins University, joel.bader@jhu.edu
- Giovanni Stracquadanio, University of Edinburgh, giovanni.stracquadanio@ed.ac.uk
- Yue Shen, BGI-Research and Shenzhen Synthetic Biology Innovation Institute, shenyue@genomics.cn
This project is licensed under the Zero Clause BSD License - see LICENSE.md for details.
This work was supported by US National Science Foundation (NSF) grants MCB-1026068 and MCB-1158201 to J.S.B., US NSF grant MCB-1445545 to J.S.B., China National High Technology Research and Development Program (“863” Program 2012AA02A708) and the National Gene Bank Project of China, and BBSRC BB/M005690/1 to Y.C.