Don't store source code for programs #36
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As of right now, we store the source code for two programs: parasight and lastz. In order to simplify the MIPTools container, this PR installs these programs from Github or a different source.
parasight
Instead of storing the source code for parasight within MIPTools, we have now created a repository to store the source code for parasight: https://github.com/bailey-lab/parasight. This PR now installs the program by cloning into the repo and copying the binary file into
opt/bin.lastz
While we have the source code for lastz v1.04.00, we do not actually use this to build lastz. Instead, we install lastz using mamba. Therefore, we can simply remove this folder.