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@baliga-lab

Baliga lab at the Institute for Systems Biology

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  1. cmonkey2 cmonkey2 Public

    Python port of cMonkey, a machine-learning based method for clustering

    Python 26 16

  2. sequencelogo.js sequencelogo.js Public

    Simple Javascript library for motif rendering

    JavaScript 9 3

  3. sygnal sygnal Public

    SYstems Genetic Network AnaLysis (SYGNAL) pipeline

    R 7 6

  4. network_portal network_portal Public

    Forked from kfoley/network_portal_django

    A web-app for archiving and exploring gene-regulatory networks.

    JavaScript 6 2

  5. cMonkeyNwInf cMonkeyNwInf Public

    Forked from djreiss/cMonkeyNwInf

    Network Inference for cMonkey output based on Inferelator and elastic-net

    R 2 1

  6. cygoose cygoose Public

    Cytoscape plugin for Gaggle Integration

    Java 1

Repositories

Showing 10 of 95 repositories
  • 3H11_R12_SynCom Public

    This repository contains data and code for the manuscript "Emergence and disruption of cooperativity in a denitrifying microbial community"

    baliga-lab/3H11_R12_SynCom’s past year of commit activity
    0 0 0 0 Updated Jun 27, 2024
  • Metabolic-Model-of-Syntrophy-for-Dv-and-Mm Public

    Syntrophic community model generated by integrating genome-scale metabolic network models of DvH and Mmp.

    baliga-lab/Metabolic-Model-of-Syntrophy-for-Dv-and-Mm’s past year of commit activity
    MATLAB 0 GPL-3.0 0 0 0 Updated Jun 18, 2024
  • miner3 Public

    mirror of matt wall's miner3

    baliga-lab/miner3’s past year of commit activity
    Jupyter Notebook 1 GPL-3.0 3 0 0 Updated May 31, 2024
  • GBM_Atlas Public

    Repository for the manuscript titled An atlas of causal and mechanistic drivers of interpatient heterogeneity in gliomas predicts treatment response based on cell states

    baliga-lab/GBM_Atlas’s past year of commit activity
    HTML 0 0 0 0 Updated May 24, 2024
  • NanoVar-Micro Public

    Nanopore Microbial Variant Calling Pipeline

    baliga-lab/NanoVar-Micro’s past year of commit activity
    Python 0 0 0 0 Updated May 23, 2024
  • cmonkey2 Public

    Python port of cMonkey, a machine-learning based method for clustering

    baliga-lab/cmonkey2’s past year of commit activity
    Python 26 LGPL-3.0 16 9 0 Updated Apr 15, 2024
  • resr_pipeline Public

    SNP calling pipeline based on ResR

    baliga-lab/resr_pipeline’s past year of commit activity
    Python 0 0 0 0 Updated Mar 26, 2024
  • wp_tfbsdb2 Public

    Wordpress plugin for integrating TFBSDB2 API

    baliga-lab/wp_tfbsdb2’s past year of commit activity
    JavaScript 0 GPL-3.0 0 0 0 Updated Feb 6, 2024
  • Global_Search Public

    Code repository for the Coral Global Search project.

    baliga-lab/Global_Search’s past year of commit activity
    Python 0 1 0 0 Updated Jan 25, 2024
  • tfbsdb2-DataProcess Public

    Data process for constructing the transcription factor (TF) to target gene interactions database.

    baliga-lab/tfbsdb2-DataProcess’s past year of commit activity
    Python 0 0 0 0 Updated Dec 18, 2023
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