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documentation on custom prior #656

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merged 3 commits into from
Mar 30, 2023

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SuryaMudimi
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added how to specify custom prior documentation in getting started under "Specifying priors" section

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@@ -662,7 +662,6 @@
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For the first paragraph I would say

Bambi's priors are a thing layer on top of PyMC distributions. If you want to ask for a prior distribution by name, it must be the name of a PyMC distribution. But sometimes we want to use more complex distributions as priors. For all those cases, Bambi's Prior class allow users to pass a distribution that returns the new prior. See the following example:

Then I would say

The example above is trival because it's just a wrapper of the pm.Normal distribution. But we can use this pattern to construct more complex distributions, such as a Truncated Laplace distribution.

And finally, close with

In summary, custom priors allow for greater flexibility by combining existing PyMC distributions in different ways. If you need to use a distribution that's not implemented in PyMC, please check the following link.

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@SuryaMudimi thanks a lot for the contribution! See the suggestions I left :)

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Just minor comments

I suggested "allow users to pass a distribution that returns the new prior" it should be "allow users to pass a function that returns a distribution that will be used as the prior"

Also

in PyMC, Please check the linkfor further details.

Should be

in PyMC, please check the link for further details

note the lowercase in "please" and the space after the link

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codecov-commenter commented Mar 24, 2023

Codecov Report

Merging #656 (5b33c56) into main (afcabb6) will increase coverage by 0.06%.
The diff coverage is 95.45%.

@@            Coverage Diff             @@
##             main     #656      +/-   ##
==========================================
+ Coverage   87.56%   87.62%   +0.06%     
==========================================
  Files          40       40              
  Lines        2629     2650      +21     
==========================================
+ Hits         2302     2322      +20     
- Misses        327      328       +1     
Impacted Files Coverage Δ
bambi/defaults/distributions.py 100.00% <ø> (ø)
bambi/defaults/families.py 87.50% <ø> (ø)
bambi/defaults/utils.py 87.50% <ø> (ø)
bambi/families/likelihood.py 85.36% <ø> (ø)
bambi/families/univariate.py 90.37% <95.00%> (+0.80%) ⬆️
bambi/families/family.py 93.25% <100.00%> (ø)

... and 1 file with indirect coverage changes

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@SuryaMudimi
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made those corrections.

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made those corrections.

Thanks!! I will merge after the checks run.

@tomicapretto tomicapretto merged commit 1523650 into bambinos:main Mar 30, 2023
GStechschulte pushed a commit to GStechschulte/bambi that referenced this pull request Mar 30, 2023
* documentation on custom prior

* changes as suggeted by Tomás

* minor changes
tomicapretto pushed a commit that referenced this pull request Mar 30, 2023
* import bambi as bmb in tests

* documentation on custom prior (#656)

* documentation on custom prior

* changes as suggeted by Tomás

* minor changes

* fixed failed tests b/c of regex match copy and paste mistake

---------

Co-authored-by: Surya Mudimi <surya.mudimi@gmail.com>
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3 participants