std::bad_alloc

[d-j-e]

Ran AlignGraph with the following command:
AlignGraph --read1 2011C-3493_1.fa --read2 2011C-3493_2.fa --contig 2011C-3493_contigs.fa --genome NC_018658.fa --distanceLow 100 --distanceHigh 1495 --extendedContig 2011C-3493_contigs_extended.fa --remainingContig 2011C-3493_contigs_remaining.fa

and got the following error:

(0) Alignment finished

CHROMOSOME 0:
(1) chromosome loaded
(2) contig alignment loaded
terminate called after throwing an instance of 'std::bad_alloc'
what(): std::bad_alloc
Aborted (core dumped)

[baoe]

Thanks for the report.

It is because your system was not able to allocate enough memory for the
program run and is not a bug of AlignGraph. Make sure your system has
enough memory and rerun it.

Best,
Bao

Ran AlignGraph with the following command:
AlignGraph --read1 2011C-3493_1.fa --read2 2011C-3493_2.fa --contig
2011C-3493_contigs.fa --genome NC_018658.fa --distanceLow 100
--distanceHigh 1495 --extendedContig 2011C-3493_contigs_extended.fa
--remainingContig 2011C-3493_contigs_remaining.fa

and got the following error:

(0) Alignment finished

CHROMOSOME 0:
(1) chromosome loaded
(2) contig alignment loaded
terminate called after throwing an instance of 'std::bad_alloc'
what(): std::bad_alloc
Aborted (core dumped)

---

Reply to this email directly or view it on GitHub:
#2

[d-j-e]

Thanks - will do. At least I now know what 'std::bad_alloc' is...