You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Hi, @baoe , I'm trying to assemble a bacteria genome of about 6.5M. Contigs was assembled by SPAdes. bowtie2 (v2.2.6) and blat (v. 35) were installed and added to $PATH.
To resume the job, the command line is "./AlignGraph --resume" without anything else. Maybe you could try it again in this way?
Best,
Bao
From: Wei Shen [notifications@github.com]
Sent: Saturday, September 19, 2015 2:17 AM
To: baoe/AlignGraph
Cc: Bao
Subject: [AlignGraph] exit unexpectly (#14)
Hi, @baoehttps://github.com/baoe , I'm trying to assemble a bacteria genome of about 6.5M. Contigs was assembled by SPAdes. bowtie2 (v2.2.6) and blat (v. 35) were installed and added to $PATH.
Hi, @baoe , I'm trying to assemble a bacteria genome of about 6.5M. Contigs was assembled by SPAdes. bowtie2 (v2.2.6) and blat (v. 35) were installed and added to $PATH.
AlignGraph exited with message below,
No wrong code appeared.
And adding option
--resume
seems not work, and no useful help message is given.Besides, an option of
--temp-dir
could be useful when submitting multiple jobs to clusters from same work directory.The text was updated successfully, but these errors were encountered: