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I'm very busy recently.
I'm very busy recently.


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@yanlilab @mbioinfo
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Wei Shen 沈 伟

Institute for Viral Hepatitis, The Second Affiliated Hospital of Chongqing Medical University, China

Github | Twitter | Biostars | Google Scholar | ORCID

  • 🔬 I’m currently working on microbial genomics and metagenomics.
  • 🔭 I'm passionate about reproducible research and open-source software.

Learn more:

I'm grateful to users who have greatly helped to report bugs and suggest new features.
I may respond to issues or fix bugs quickly, but I usually implement new features periodically (two or more weeks).


  1. seqkit seqkit Public

    A cross-platform and ultrafast toolkit for FASTA/Q file manipulation

    Go 1.2k 157

  2. kmcp kmcp Public

    Accurate metagenomic profiling && Fast large-scale sequence/genome searching

    Go 175 13

  3. taxonkit taxonkit Public

    A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV

    Go 349 29

  4. csvtk csvtk Public

    A cross-platform, efficient and practical CSV/TSV toolkit in Golang

    Go 980 85

  5. unikmer unikmer Public

    A versatile toolkit for k-mers with taxonomic information

    Go 72 7

  6. perfect-bioinformatic-tools perfect-bioinformatic-tools Public

    What should perfect bioinformatic tools be like?

    92 1