Update planemo to 0.75.23 #1148
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| name: Test readtagger | |
| on: [push, pull_request] | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| task: ['py37-lint', 'planemo'] | |
| steps: | |
| - run: sudo apt-get install libcurl4-nss-dev | |
| - uses: actions/checkout@v2 | |
| - run: git fetch --prune --unshallow | |
| - uses: goanpeca/setup-miniconda@master | |
| with: | |
| channels: conda-forge,bioconda | |
| - name: Install conda-build | |
| run: conda install conda-build=3.18.12 | |
| - name: Build and install readtagger | |
| shell: bash -l {0} | |
| run: | | |
| conda build conda/multiprocessing-logging | |
| conda build conda/readtagger | |
| conda install --use-local readtagger | |
| - name: Install test dependencies | |
| shell: bash -l {0} | |
| run: conda install tox virtualenv | |
| - name: Cache test data | |
| run: curl -L https://github.com/bardin-lab/dmel-transposon-reference-data/raw/master/fasta_sequences/dm6_TE_annotations_sequences.fasta -o ~/ref.fa | |
| - name: Test with tox | |
| shell: bash -l {0} | |
| run: | | |
| tox -e '${{ matrix.task }}' |