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Releases: baryshnikova-lab/safe-java

1.0 Beta 7

18 Feb 11:56
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1.0 Beta 7 Pre-release
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  • Updated UI text for clarity and brevity.
  • Added domain report when exporting results from Step 4.
  • Added interpretation guidelines to neighborhood report.
  • Added visual indicator for when network visualization is being recomputed in Steps 2/4.

1.0 Beta 6

09 Feb 13:52
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1.0 Beta 6 Pre-release
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  • Changed color scheme to red-blue (high-low).
  • Changed "annotation" to "attribute".
  • Added ability to export enrichment scores in Step 2.
  • Added ability to filter attribute/domain tables in Steps 2/4 based on current node selection.
  • Added support for remembering the last directory browsed when picking an attribute file.
  • Fixed bug where user can attempt to compute enrichment when no attribute file is selected.
  • Fixed bug where table columns are laid out incorrectly in Cytoscape 3.4.

1.0 Beta 5

16 Dec 13:31
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1.0 Beta 5 Pre-release
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  • First attribute is now pre-selected when building the enrichment landscape
  • Added color legend for Step 2 enrichment
  • Fixed bug where annotation files without a header are handled incorrectly
  • Fixed bug where enrichment visualization is recompute unnecessarily

1.0 Beta 4

01 Dec 12:33
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1.0 Beta 4 Pre-release
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  • Initial Cytoscape App Store release
  • Added "Examples" link to Step 1 to direct users towards project wiki and sample data

1.0 Beta 3

08 Nov 17:11
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1.0 Beta 3 Pre-release
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  • Fixed issue where edge weights are being processed even though a non-edge-weight-based distance metric is selected
  • Fixed issue where app crashes when attempting to build a composite map when no attributes are significantly enriched
  • Fixed issue where numeric non-double edge weights causes app to crash

Sample Data

1.0 Beta 2

23 Sep 12:03
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1.0 Beta 2 Pre-release
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1.0 Beta 1

11 Aug 10:17
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1.0 Beta 1 Pre-release
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