Sample Data

Networks

1. Genetic interaction similarity network from Costanzo~Boone, Science, 2010 (S. cerevisiae):

   1. Cytoscape session
   2. [TAB-delimited file] (../raw/master/core/src/test/resources/Costanzo_Science_2010_nodeA_nodeB_edgeWeight.txt)

2. Genetic interaction similarity network from Costanzo~Boone, Science, 2016 (S. cerevisiae):

   1. Cytoscape session

Functional Annotation Standards

The SAFE app can read functional annotation data in tab-delimited format. The first row should contain the names of the functional attributes. The first column should contain the node labels (e.g. ORF).

• Sample annotation file (to illustrate the expected format)
• GO Biological Process annotations for S. cerevisiae (as of 2014-Aug-19)
• GO Biological Process annotations for H. sapiens (as of 2015-05-09) -- UniProt gene identifiers
• Hoepfner Movva 2014 - Doxorubicin
• Hoepfner Movva 2014 - HOP Known

Additional Files

• Genetic interaction similarity network from Costanzo~Boone, Science, 2010 (S. cerevisiae):
  • [Gene names to ORF names map] (../raw/master/core/src/test/resources/Costanzo_Science_2010_nodeAttribute_ORF.txt)