RLS: Update to numpy 1.13 release

Sync upstream changes to be compatible with 1.13 release

randomstate/randomstate.pyx

@@ -949,33 +949,42 @@ cdef class RandomState:
         key = np.dtype(dtype).name
         if not key in _randint_type:
             raise TypeError('Unsupported dtype "%s" for randint' % key)
+
         lowbnd, highbnd = _randint_type[key]
 
-        if low < lowbnd:
+        # TODO: Do not cast these inputs to Python int
+        #
+        # This is a workaround until gh-8851 is resolved (bug in NumPy
+        # integer comparison and subtraction involving uint64 and non-
+        # uint64). Afterwards, remove these two lines.
+        ilow = int(low)
+        ihigh = int(high)
+
+        if ilow < lowbnd:
             raise ValueError("low is out of bounds for %s" % (key,))
-        if high > highbnd:
+        if ihigh > highbnd:
             raise ValueError("high is out of bounds for %s" % (key,))
-        if low >= high:
+        if ilow >= ihigh:
             raise ValueError("low >= high")
 
         if key == 'int32':
-            ret = _rand_int32(low, high - 1, size, &self.rng_state, self.lock)
+            ret = _rand_int32(ilow, ihigh - 1, size, &self.rng_state, self.lock)
         elif key == 'int64':
-            ret = _rand_int64(low, high - 1, size, &self.rng_state, self.lock)
+            ret = _rand_int64(ilow, ihigh - 1, size, &self.rng_state, self.lock)
         elif key == 'int16':
-            ret = _rand_int16(low, high - 1, size, &self.rng_state, self.lock)
+            ret = _rand_int16(ilow, ihigh - 1, size, &self.rng_state, self.lock)
         elif key == 'int8':
-            ret = _rand_int8(low, high - 1, size, &self.rng_state, self.lock)
+            ret = _rand_int8(ilow, ihigh - 1, size, &self.rng_state, self.lock)
         elif key == 'uint64':
-            ret = _rand_uint64(low, high - 1, size, &self.rng_state, self.lock)
+            ret = _rand_uint64(ilow, ihigh - 1, size, &self.rng_state, self.lock)
         elif key == 'uint32':
-            ret = _rand_uint32(low, high - 1, size, &self.rng_state, self.lock)
+            ret = _rand_uint32(ilow, ihigh - 1, size, &self.rng_state, self.lock)
         elif key == 'uint16':
-            ret = _rand_uint16(low, high - 1, size, &self.rng_state, self.lock)
+            ret = _rand_uint16(ilow, ihigh - 1, size, &self.rng_state, self.lock)
         elif key == 'uint8':
-            ret = _rand_uint8(low, high - 1, size, &self.rng_state, self.lock)
+            ret = _rand_uint8(ilow, ihigh - 1, size, &self.rng_state, self.lock)
         elif key == 'bool':
-            ret = _rand_bool(low, high - 1, size, &self.rng_state, self.lock)
+            ret = _rand_bool(ilow, ihigh - 1, size, &self.rng_state, self.lock)
 
         if size is None:
             if dtype in (np.bool, np.int, np.long):
@@ -1021,7 +1030,7 @@ cdef class RandomState:
         ----------
         a : 1-D array-like or int
             If an ndarray, a random sample is generated from its elements.
-            If an int, the random sample is generated as if a was np.arange(n)
+            If an int, the random sample is generated as if a were np.arange(a)
         size : int or tuple of ints, optional
             Output shape.  If the given shape is, e.g., ``(m, n, k)``, then
             ``m * n * k`` samples are drawn.  Default is None, in which case a
@@ -1035,7 +1044,7 @@ cdef class RandomState:
 
         Returns
         -------
-        samples : 1-D ndarray, shape (size,)
+        samples : single item or ndarray
             The generated random samples
 
         Raises
@@ -4094,8 +4103,8 @@ cdef class RandomState:
         Instead of specifying the full covariance matrix, popular
         approximations include:
 
-          - Spherical covariance (*cov* is a multiple of the identity matrix)
-          - Diagonal covariance (*cov* has non-negative elements, and only on
+          - Spherical covariance (`cov` is a multiple of the identity matrix)
+          - Diagonal covariance (`cov` has non-negative elements, and only on
             the diagonal)
 
         This geometrical property can be seen in two dimensions by plotting
@@ -4507,6 +4516,7 @@ cdef class RandomState:
             with self.lock:
                 for i in reversed(range(1, n)):
                     j = random_interval(&self.rng_state, i)
+                    if i == j : continue # i == j is not needed and memcpy is undefined.
                     buf[...] = x[j]
                     x[j] = x[i]
                     x[i] = buf

randomstate/tests/test_numpy_mt19937.py

@@ -158,22 +158,42 @@ def test_rng_zero_and_extremes(self):
         for dt in self.itype:
             lbnd = 0 if dt is np.bool_ else np.iinfo(dt).min
             ubnd = 2 if dt is np.bool_ else np.iinfo(dt).max + 1
+
             tgt = ubnd - 1
             assert_equal(self.rfunc(tgt, tgt + 1, size=1000, dtype=dt), tgt)
+
             tgt = lbnd
             assert_equal(self.rfunc(tgt, tgt + 1, size=1000, dtype=dt), tgt)
+
             tgt = (lbnd + ubnd) // 2
             assert_equal(self.rfunc(tgt, tgt + 1, size=1000, dtype=dt), tgt)
 
+    def test_full_range(self):
+        # Test for ticket #1690
+
+        for dt in self.itype:
+            lbnd = 0 if dt is np.bool_ else np.iinfo(dt).min
+            ubnd = 2 if dt is np.bool_ else np.iinfo(dt).max + 1
+
+            try:
+                self.rfunc(lbnd, ubnd, dtype=dt)
+            except Exception as e:
+                raise AssertionError("No error should have been raised, "
+                                     "but one was with the following "
+                                     "message:\n\n%s" % str(e))
+
     def test_in_bounds_fuzz(self):
         # Don't use fixed seed
         mt19937.seed()
+
         for dt in self.itype[1:]:
             for ubnd in [4, 8, 16]:
                 vals = self.rfunc(2, ubnd, size=2**16, dtype=dt)
                 assert_(vals.max() < ubnd)
                 assert_(vals.min() >= 2)
-        vals = self.rfunc(0, 2, size=2**16, dtype=np.bool)
+
+        vals = self.rfunc(0, 2, size=2 ** 16, dtype=np.bool_)
+
         assert_(vals.max() < 2)
         assert_(vals.min() >= 0)
 
@@ -210,6 +230,29 @@ def test_repeatability(self):
         res = hashlib.md5(val).hexdigest()
         assert_(tgt[np.dtype(np.bool).name] == res)
 
+    def test_int64_uint64_corner_case(self):
+        # When stored in Numpy arrays, `lbnd` is casted
+        # as np.int64, and `ubnd` is casted as np.uint64.
+        # Checking whether `lbnd` >= `ubnd` used to be
+        # done solely via direct comparison, which is incorrect
+        # because when Numpy tries to compare both numbers,
+        # it casts both to np.float64 because there is
+        # no integer superset of np.int64 and np.uint64. However,
+        # `ubnd` is too large to be represented in np.float64,
+        # causing it be round down to np.iinfo(np.int64).max,
+        # leading to a ValueError because `lbnd` now equals
+        # the new `ubnd`.
+
+        dt = np.int64
+        tgt = np.iinfo(np.int64).max
+        lbnd = np.int64(np.iinfo(np.int64).max)
+        ubnd = np.uint64(np.iinfo(np.int64).max + 1)
+
+        # None of these function calls should
+        # generate a ValueError now.
+        actual = mt19937.randint(lbnd, ubnd, dtype=dt)
+        assert_equal(actual, tgt)
+
     def test_respect_dtype_singleton(self):
         # See gh-7203
         for dt in self.itype:

randomstate/tests/test_numpy_mt19937_regressions.py

@@ -55,15 +55,6 @@ def test_permutation_longs(self):
         b = mt19937.permutation(long(12))
         assert_array_equal(a, b)
 
-    def test_randint_range(self):
-        # Test for ticket #1690
-        lmax = np.iinfo('l').max
-        lmin = np.iinfo('l').min
-        try:
-            mt19937.randint(lmin, lmax)
-        except:
-            raise AssertionError
-
     def test_shuffle_mixed_dimension(self):
         # Test for trac ticket #2074
         for t in [[1, 2, 3, None],

setup.py

@@ -173,7 +173,11 @@ def is_pure(self):
 
 
 try:
-    subprocess.call(['pandoc', '--from=markdown', '--to=rst', '--output=README.rst', 'README.md'])
+    import os
+    readme_orig_time = os.path.getmtime('README.md')
+    readme_mod_time = os.path.getmtime('README.rst')
+    if readme_orig_time > readme_mod_time:
+        subprocess.call(['pandoc', '--from=markdown', '--to=rst', '--output=README.rst', 'README.md'])
 except:
     pass
 # Generate files and extensions