Parsing of the second .java file fails

[bzz]

Using https://gist.github.com/bzz/c0c3dbcab5fecbe48e22167e2ad78595 with .py and python replaces to .java and java

Seems to process Application.java but fail on next https://github.com/damoeb/kalipo/blob/master/kalipo-service/src/main/java/org/kalipo/ApplicationWebXml.java

Server logs

time="2017-06-21T13:59:01Z" level=debug msg="sending ParseUAST request: Filename:"kalipo-service/src/main/java/org/kalipo/ApplicationWebXml.java" Language:"java" Content:"package org.kalipo;\n\nimport org.kalipo.config.Constants;\nimport org.slf4j.Logger;\nimport org.slf4j.LoggerFactory;\nimport org.springframework.boot.builder.SpringApplicationBuilder;\nimport org.springframework.boot.context.web.SpringBootServletInitializer;\n\n/**\n * This is an helper Java class that provides an alternative to creating a web.xml.\n */\npublic class ApplicationWebXml extends SpringBootServletInitializer {\n\n    private final Logger log = LoggerFactory.getLogger(ApplicationWebXml.class);\n\n    @Override\n    protected SpringApplicationBuilder configure(SpringApplicationBuilder application) {\n        return application.profiles(addDefaultProfile())\n                .showBanner(false)\n                .sources(Application.class);\n    }\n\n    /**\n     * Set a default profile if it has not been set.\n     * <p/>\n     * <p>\n     * Please use -Dspring.profiles.active=dev\n     * </p>\n     */\n    private String addDefaultProfile() {\n        String profile = System.getProperty(\"spring.profiles.active\");\n        if (profile != null) {\n            log.info(\"Running with Spring profile(s) : {}\", profile);\n            return profile;\n        }\n\n        log.warn(\"No Spring profile configured, running with default configuration\");\n        return Constants.SPRING_PROFILE_DEVELOPMENT;\n    }\n}\n" "

Client logs

Read kalipo-service/src/main/java/org/kalipo/ApplicationWebXml.java, 1297 bytes	Parsing file:'kalipo-service/src/main/java/org/kalipo/ApplicationWebXml.java', con

panic: runtime error: invalid memory address or nil pointer dereference
[signal SIGSEGV: segmentation violation code=0x1 addr=0x8 pc=0x1186147]

goroutine 1 [running]:
github.com/bblfsh/sdk/uast.(*Node).ProtoSize(0x0, 0xc4201c70b0)
	/go/src/github.com/bblfsh/sdk/uast/generated.pb.go:510 +0x37
github.com/bblfsh/sdk/uast.(*Node).Marshal(0x0, 0x1c18070, 0xc4200102c0, 0xc4201c7080, 0x0, 0x0)
	/go/src/github.com/bblfsh/sdk/uast/generated.pb.go:352 +0x2f
main.main.func1(0xc420327130, 0xc420327130, 0x0)
	/go/src/github.com/src-d/analysis-pipeline/juanjo/pyFromGit2ast2pb.go:69 +0x4c8

But also might be related to bblfsh/bblfshd#26 or #19 although there is nothing fatal in logs in this case, nor EOF.

Just in case, full log

time="2017-06-21T13:58:29Z" level=debug msg="binding to 0.0.0.0:9432"
time="2017-06-21T13:58:29Z" level=debug msg="initializing runtime at /tmp/bblfsh-runtime"
time="2017-06-21T13:58:29Z" level=debug msg="starting server"
time="2017-06-21T13:58:29Z" level=debug msg="registering gRPC service"
time="2017-06-21T13:58:29Z" level=info msg="starting gRPC server"


time="2017-06-21T13:58:46Z" level=debug msg="Looking for TLS certificates and private keys in /etc/docker/certs.d/docker.io"
time="2017-06-21T13:58:46Z" level=debug msg="Using registries.d directory /etc/containers/registries.d for sigstore configuration"
time="2017-06-21T13:58:46Z" level=debug msg=" No signature storage configuration found for docker.io/bblfsh/java-driver:latest"
time="2017-06-21T13:58:46Z" level=debug msg="GET https://registry-1.docker.io/v2/"
time="2017-06-21T13:58:47Z" level=debug msg="Ping https://registry-1.docker.io/v2/ err <nil>"
time="2017-06-21T13:58:47Z" level=debug msg="Ping https://registry-1.docker.io/v2/ status 401"
time="2017-06-21T13:58:47Z" level=debug msg="GET https://registry-1.docker.io/v2/bblfsh/java-driver/manifests/latest"
time="2017-06-21T13:58:48Z" level=debug msg="Downloading /v2/bblfsh/java-driver/blobs/sha256:3395de6e0b1034d434a3f4adb4cd16a847de81e2fb56084834187a5f1e076ebb"
time="2017-06-21T13:58:48Z" level=debug msg="GET https://registry-1.docker.io/v2/bblfsh/java-driver/blobs/sha256:3395de6e0b1034d434a3f4adb4cd16a847de81e2fb56084834187a5f1e076ebb"
time="2017-06-21T13:58:49Z" level=debug msg="Looking for TLS certificates and private keys in /etc/docker/certs.d/docker.io"
time="2017-06-21T13:58:49Z" level=debug msg="Using registries.d directory /etc/containers/registries.d for sigstore configuration"
time="2017-06-21T13:58:49Z" level=debug msg=" No signature storage configuration found for docker.io/bblfsh/java-driver:latest"
time="2017-06-21T13:58:49Z" level=debug msg="GET https://registry-1.docker.io/v2/"
time="2017-06-21T13:58:49Z" level=debug msg="Ping https://registry-1.docker.io/v2/ err <nil>"
time="2017-06-21T13:58:49Z" level=debug msg="Ping https://registry-1.docker.io/v2/ status 401"
time="2017-06-21T13:58:50Z" level=debug msg="GET https://registry-1.docker.io/v2/bblfsh/java-driver/manifests/latest"
time="2017-06-21T13:58:51Z" level=debug msg="Looking for TLS certificates and private keys in /etc/docker/certs.d/docker.io"
time="2017-06-21T13:58:51Z" level=debug msg="Using registries.d directory /etc/containers/registries.d for sigstore configuration"
time="2017-06-21T13:58:51Z" level=debug msg=" No signature storage configuration found for docker.io/bblfsh/java-driver:latest"
time="2017-06-21T13:58:51Z" level=debug msg="Downloading /v2/bblfsh/java-driver/blobs/sha256:6f821164d5b7ec94868795c1fb8dc6fd7d1fe51e04f97a6cf3a487868f2f5d68"
time="2017-06-21T13:58:51Z" level=debug msg="GET https://registry-1.docker.io/v2/"
time="2017-06-21T13:58:51Z" level=debug msg="Ping https://registry-1.docker.io/v2/ err <nil>"
time="2017-06-21T13:58:51Z" level=debug msg="Ping https://registry-1.docker.io/v2/ status 401"
time="2017-06-21T13:58:51Z" level=debug msg="GET https://registry-1.docker.io/v2/bblfsh/java-driver/blobs/sha256:6f821164d5b7ec94868795c1fb8dc6fd7d1fe51e04f97a6cf3a487868f2f5d68"
time="2017-06-21T13:58:52Z" level=debug msg="Downloading /v2/bblfsh/java-driver/blobs/sha256:e97dca3f99d69fcab2e39d6cee7daad932483a0069954d03b071544bd2451a06"
time="2017-06-21T13:58:52Z" level=debug msg="GET https://registry-1.docker.io/v2/bblfsh/java-driver/blobs/sha256:e97dca3f99d69fcab2e39d6cee7daad932483a0069954d03b071544bd2451a06"
time="2017-06-21T13:58:58Z" level=debug msg="Downloading /v2/bblfsh/java-driver/blobs/sha256:cb846aee9ebbc969b2bb93fe98ecfb865e92d419d6bd654dfe12b1d4c54e032c"
time="2017-06-21T13:58:58Z" level=debug msg="GET https://registry-1.docker.io/v2/bblfsh/java-driver/blobs/sha256:cb846aee9ebbc969b2bb93fe98ecfb865e92d419d6bd654dfe12b1d4c54e032c"
time="2017-06-21T13:58:59Z" level=debug msg="Downloading /v2/bblfsh/java-driver/blobs/sha256:3395de6e0b1034d434a3f4adb4cd16a847de81e2fb56084834187a5f1e076ebb"
time="2017-06-21T13:58:59Z" level=debug msg="GET https://registry-1.docker.io/v2/bblfsh/java-driver/blobs/sha256:3395de6e0b1034d434a3f4adb4cd16a847de81e2fb56084834187a5f1e076ebb"
time="2017-06-21T13:59:00Z" level=debug msg="creating container for bblfsh/java-driver:latest"
time="2017-06-21T13:59:00Z" level=debug msg="starting up container bblfsh/java-driver:latest (01BK5F5YNF7F42M3W05JFAZP74)"
time="2017-06-21T13:59:00Z" level=debug msg="container started bblfsh/java-driver:latest (01BK5F5YNF7F42M3W05JFAZP74)"
proto: no encoder for Filename string [GetProperties]
proto: no encoder for Language string [GetProperties]
proto: no encoder for Content string [GetProperties]
time="2017-06-21T13:59:00Z" level=debug msg="sending ParseUAST request: Filename:"kalipo-service/src/main/java/org/kalipo/Application.java" Language:"java" Content:"package org.kalipo;\n\nimport org.kalipo.config.Constants;\nimport org.slf4j.Logger;\nimport org.slf4j.LoggerFactory;\nimport org.springframework.boot.SpringApplication;\nimport org.springframework.boot.actuate.autoconfigure.MetricFilterAutoConfiguration;\nimport org.springframework.boot.actuate.autoconfigure.MetricRepositoryAutoConfiguration;\nimport org.springframework.boot.autoconfigure.EnableAutoConfiguration;\nimport org.springframework.boot.context.embedded.ConfigurableEmbeddedServletContainer;\nimport org.springframework.boot.context.embedded.EmbeddedServletContainerCustomizer;\nimport org.springframework.context.annotation.ComponentScan;\nimport org.springframework.core.env.Environment;\nimport org.springframework.core.env.SimpleCommandLinePropertySource;\nimport org.springframework.scheduling.annotation.EnableAsync;\n\nimport javax.annotation.PostConstruct;\nimport javax.inject.Inject;\nimport java.io.File;\nimport java.io.IOException;\nimport java.util.Arrays;\n\n@EnableAsync\n@ComponentScan\n@EnableAutoConfiguration(exclude = {MetricFilterAutoConfiguration.class, MetricRepositoryAutoConfiguration.class})\npublic class Application implements EmbeddedServletContainerCustomizer {\n\n    private final Logger log = LoggerFactory.getLogger(Application.class);\n\n    @Inject\n    private Environment env;\n\n\n    /**\n     * Initializes kalipo.\n     * <p>\n     * Spring profiles can be configured with a program arguments --spring.profiles.active=your-active-profile\n     * <p>\n     */\n    @PostConstruct\n    public void initApplication() throws IOException {\n        if (env.getActiveProfiles().length == 0) {\n            log.warn(\"No Spring profile configured, running with default configuration\");\n        } else {\n            log.info(\"Running with Spring profile(s) : {}\", Arrays.toString(env.getActiveProfiles()));\n        }\n    }\n\n    /**\n     * Main method, used to run the application.\n     * <p>\n     * To run the application with hot reload enabled, add the following arguments to your JVM:\n     * \"-javaagent:spring_loaded/springloaded-jhipster.jar -noverify -Dspringloaded=plugins=io.github.jhipster.loaded.instrument.JHipsterLoadtimeInstrumentationPlugin\"\n     */\n    public static void main(String[] args) {\n\n        SpringApplication app = new SpringApplication(Application.class);\n        app.setShowBanner(false);\n\n        SimpleCommandLinePropertySource source = new SimpleCommandLinePropertySource(args);\n\n        // Check if the selected profile has been set as argument.\n        // if not the development profile will be added\n        addDefaultProfile(app, source);\n\n        app.run(args);\n    }\n\n    /**\n     * Set a default profile if it has not been set\n     */\n    private static void addDefaultProfile(SpringApplication app, SimpleCommandLinePropertySource source) {\n        if (!source.containsProperty(\"spring.profiles.active\")) {\n            app.setAdditionalProfiles(Constants.SPRING_PROFILE_DEVELOPMENT);\n        }\n    }\n\n    @Override\n    public void customize(ConfigurableEmbeddedServletContainer container) {\n        final String clientProject = \"kalipo-client\";\n\n        if (env.acceptsProfiles(Constants.SPRING_PROFILE_PRODUCTION)) {\n            container.setDocumentRoot(new File(clientProject + \"/dist\"));\n        } else {\n            container.setDocumentRoot(new File(clientProject + \"/app\"));\n        }\n    }\n}\n" "
time="2017-06-21T13:59:01Z" level=debug msg="sending ParseUAST request: Filename:"kalipo-service/src/main/java/org/kalipo/ApplicationWebXml.java" Language:"java" Content:"package org.kalipo;\n\nimport org.kalipo.config.Constants;\nimport org.slf4j.Logger;\nimport org.slf4j.LoggerFactory;\nimport org.springframework.boot.builder.SpringApplicationBuilder;\nimport org.springframework.boot.context.web.SpringBootServletInitializer;\n\n/**\n * This is an helper Java class that provides an alternative to creating a web.xml.\n */\npublic class ApplicationWebXml extends SpringBootServletInitializer {\n\n    private final Logger log = LoggerFactory.getLogger(ApplicationWebXml.class);\n\n    @Override\n    protected SpringApplicationBuilder configure(SpringApplicationBuilder application) {\n        return application.profiles(addDefaultProfile())\n                .showBanner(false)\n                .sources(Application.class);\n    }\n\n    /**\n     * Set a default profile if it has not been set.\n     * <p/>\n     * <p>\n     * Please use -Dspring.profiles.active=dev\n     * </p>\n     */\n    private String addDefaultProfile() {\n        String profile = System.getProperty(\"spring.profiles.active\");\n        if (profile != null) {\n            log.info(\"Running with Spring profile(s) : {}\", profile);\n            return profile;\n        }\n\n        log.warn(\"No Spring profile configured, running with default configuration\");\n        return Constants.SPRING_PROFILE_DEVELOPMENT;\n    }\n}\n" "

[smola]

Fixed in v0.2.0. Please, verify @abeaumont