-
Notifications
You must be signed in to change notification settings - Fork 4
/
_pkgdown.yml
73 lines (72 loc) · 1.47 KB
/
_pkgdown.yml
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
url: https://bbsbayes.github.io/bbsBayes2/
template:
bootstrap: 5
navbar:
structure:
left:
- intro
- reference
- articles
- news
right:
- search
- github
articles:
- title: Usage
contents:
- articles/bbsBayes2
- articles/stratification
- articles/models
- articles/advanced
reference:
- title: BBS Data
desc: Functions for downloading and managing BBS data
contents:
- ends_with("bbs_data")
- remove_cache
- title: Processing data
desc: |
Functions for processing BBS data according to the type of models to be run
contents:
- stratify
- prepare_data
- prepare_spatial
- prepare_model
- title: Stan models
desc: |
Functions for running Stan models via cmdstanr, as well as for saving and evaluating convergence
contents:
- run_model
- save_model_run
- copy_model_file
- get_convergence
- get_model_vars
- get_summary
- have_cmdstan
- title: Indices and trends
desc: Functions for generating indices and trends from models
contents:
- generate_indices
- generate_trends
- title: Plots
desc: Functions for plotting indices and trends
contents:
- plot_map
- plot_indices
- plot_geofacet
- title: Helper functions
contents:
- search_species
- load_map
- assign_prov_state
- title: Included data
contents:
- bbs_data_sample
- bbs_strata
- bbs_models
- pacific_wren_model
- species_forms
- title: Deprecated/Defunct functions
contents:
- bbsBayes2-defunct
- bbsBayes2-deprecated