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A3
A3
 
 
A3_figures
A3_figures
 
 
GSE193417
GSE193417
 
 
A1 Code.Rmd
A1 Code.Rmd
 
 
A2_Sabbir_Hossain.Rmd
A2_Sabbir_Hossain.Rmd
 
 
A2_Sabbir_Hossain.html
A2_Sabbir_Hossain.html
 
 
A2_Sabbir_Hossain.nb.html
A2_Sabbir_Hossain.nb.html
 
 
A3_Sabbir_Hossain.Rmd
A3_Sabbir_Hossain.Rmd
 
 
A3_Sabbir_Hossain.html
A3_Sabbir_Hossain.html
 
 
A3_Sabbir_Hossain.nb.html
A3_Sabbir_Hossain.nb.html
 
 
Assignment1 Code.Rmd
Assignment1 Code.Rmd
 
 
GSE193417.rds
GSE193417.rds
 
 
GSE193417_filtered_CPM.rds
GSE193417_filtered_CPM.rds
 
 
GSE193417_filtered_symbols.rds
GSE193417_filtered_symbols.rds
 
 
GSE193417_finalfiltered_symbols.rds
GSE193417_finalfiltered_symbols.rds
 
 
GSE193417_normalized_CPM.rds
GSE193417_normalized_CPM.rds
 
 
GSE193417_normalized_datastruct.rds
GSE193417_normalized_datastruct.rds
 
 
GSEA_GSE193417_ranked.rnk
GSEA_GSE193417_ranked.rnk
 
 
Human_GOBP_AllPathways_no_GO_iea_March_01_2021_symbol.gmt
Human_GOBP_AllPathways_no_GO_iea_March_01_2021_symbol.gmt
 
 
README.md
README.md
 
 
all_down_ensg.txt
all_down_ensg.txt
 
 
all_down_hgnc.txt
all_down_hgnc.txt
 
 
all_up_ens.txt
all_up_ens.txt
 
 
all_up_hgnc.txt
all_up_hgnc.txt
 
 
fgseaRes.txt
fgseaRes.txt
 
 
gsa_load.out
gsa_load.out
 
 
gsea_report_for_na_neg_1650051713721.html
gsea_report_for_na_neg_1650051713721.html
 
 
pos_snapshot.html
pos_snapshot.html
 
 

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Sabbir_Hossain

repository for bcb420 for Sabbir Hossain

Assignment 1

HTML Notebook File

Journal

https://github.com/bcb420-2022/Sabbir_Hossain/wiki/Journal-Entry-Assignment-%231:---Data-set-selection-and-initial-Processing

Assignment 2

HTML Notebook File

Journal

https://github.com/bcb420-2022/Sabbir_Hossain/wiki/Journal-Entry-Assignment-%232:--Differential-Gene-expression-and-Preliminary-ORA

Assignment 3

HTML Notebook File

Journal

https://github.com/bcb420-2022/Sabbir_Hossain/wiki/Journal-Entry-Assignment-%233:--Dataset-Pathway-and-Network-Analysis

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