update genome configs for VEP97

bcbio · Jul 15, 2019 · 120590b · 120590b
1 parent efc28bf
commit 120590b
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Showing 15 changed files with 30 additions and 30 deletions.
diff --git a/config/genomes/BDGP6-resources.yaml b/config/genomes/BDGP6-resources.yaml
@@ -1,5 +1,5 @@
-version: 16
+version: 17
 
 aliases:
-  ensembl: drosophila_melanogaster_vep_96_BDGP6
+  ensembl: drosophila_melanogaster_vep_97_BDGP6
   snpeff: BDGP5.75
diff --git a/config/genomes/GRCh37-resources.yaml b/config/genomes/GRCh37-resources.yaml
@@ -1,9 +1,9 @@
-version: 50
+version: 51
 
 aliases:
   human: true
   snpeff: GRCh37.75
-  ensembl: homo_sapiens_merged_vep_96_GRCh37
+  ensembl: homo_sapiens_merged_vep_97_GRCh37
 
 variation:
   dbsnp: ../variation/dbsnp-151.vcf.gz

diff --git a/config/genomes/GRCz11-resources.yaml b/config/genomes/GRCz11-resources.yaml
@@ -1,5 +1,5 @@
-version: 4
+version: 5
 
 aliases:
-  ensembl: danio_rerio_vep_96_GRCz11
+  ensembl: danio_rerio_vep_97_GRCz11
   #snpeff: 
diff --git a/config/genomes/Sscrofa11.1-resources.yaml b/config/genomes/Sscrofa11.1-resources.yaml
@@ -1,5 +1,5 @@
-version: 4
+version: 5
 
 aliases:
-  ensembl: sus_scrofa_vep_96_Sscrofa11.1
+  ensembl: sus_scrofa_vep_97_Sscrofa11.1
   #snpeff: 
diff --git a/config/genomes/WBcel235-resources.yaml b/config/genomes/WBcel235-resources.yaml
@@ -1,5 +1,5 @@
-version: 15
+version: 16
 
 aliases:
-  ensembl: caenorhabditis_elegans_vep_96_WBcel235
+  ensembl: caenorhabditis_elegans_vep_97_WBcel235
   snpeff: WBcel235.86
diff --git a/config/genomes/canFam3-resources.yaml b/config/genomes/canFam3-resources.yaml
@@ -1,7 +1,7 @@
-version: 22
+version: 23
 
 aliases:
-  ensembl: canis_familiaris_vep_96_CanFam3.1
+  ensembl: canis_familiaris_vep_97_CanFam3.1
   snpeff: CanFam3.1.86
 
 variation:

diff --git a/config/genomes/dm3-resources.yaml b/config/genomes/dm3-resources.yaml
@@ -1,5 +1,5 @@
-version: 16
+version: 17
 
 aliases:
-  ensembl: drosophila_melanogaster_vep_96_BDGP6
+  ensembl: drosophila_melanogaster_vep_97_BDGP6
   snpeff: BDGP5.75
diff --git a/config/genomes/galGal4-resources.yaml b/config/genomes/galGal4-resources.yaml
@@ -1,5 +1,5 @@
-version: 11
+version: 12
 
 aliases:
-  ensembl: gallus_gallus_vep_96_Galgal4
+  ensembl: gallus_gallus_vep_97_Galgal4
   snpeff: Galgal4.75
diff --git a/config/genomes/hg19-resources.yaml b/config/genomes/hg19-resources.yaml
@@ -1,9 +1,9 @@
-version: 52
+version: 53
 
 aliases:
   human: true
   snpeff: GRCh37.75
-  ensembl: homo_sapiens_merged_vep_96_GRCh37
+  ensembl: homo_sapiens_merged_vep_97_GRCh37
 
 variation:
   dbsnp: ../variation/dbsnp-151.vcf.gz

diff --git a/config/genomes/hg38-noalt-resources.yaml b/config/genomes/hg38-noalt-resources.yaml
@@ -1,9 +1,9 @@
-version: 26
+version: 27
 
 aliases:
   human: true
   snpeff: GRCh38.86
-  ensembl: homo_sapiens_merged_vep_96_GRCh38
+  ensembl: homo_sapiens_merged_vep_97_GRCh38
 
 variation:
   dbsnp: ../variation/dbsnp-151.vcf.gz

diff --git a/config/genomes/hg38-resources.yaml b/config/genomes/hg38-resources.yaml
@@ -1,9 +1,9 @@
-version: 37
+version: 38
 
 aliases:
   human: true
   snpeff: GRCh38.86
-  ensembl: homo_sapiens_merged_vep_96_GRCh38
+  ensembl: homo_sapiens_merged_vep_97_GRCh38
 
 variation:
   dbsnp: ../variation/dbsnp-151.vcf.gz

diff --git a/config/genomes/mm10-resources.yaml b/config/genomes/mm10-resources.yaml
@@ -1,8 +1,8 @@
-version: 29
+version: 30
 
 aliases:
   snpeff: GRCm38.86
-  ensembl: mus_musculus_vep_96_GRCm38
+  ensembl: mus_musculus_vep_97_GRCm38
 
 variation:
   dbsnp: ../variation/mm10-dbSNP-2013-09-12.vcf.gz

diff --git a/config/genomes/rn6-resources.yaml b/config/genomes/rn6-resources.yaml
@@ -1,7 +1,7 @@
-version: 14
+version: 15
 
 aliases:
-  ensembl: rattus_norvegicus_vep_96_Rnor_6.0
+  ensembl: rattus_norvegicus_vep_97_Rnor_6.0
   snpeff: Rnor_6.0.86
 rnaseq:
   transcripts: ../rnaseq/ref-transcripts.gtf

diff --git a/config/genomes/sacCer3-resources.yaml b/config/genomes/sacCer3-resources.yaml
@@ -1,7 +1,7 @@
-version: 18
+version: 19
 
 aliases:
-  ensembl: saccharomyces_cerevisiae_vep_96_R64-1-1
+  ensembl: saccharomyces_cerevisiae_vep_97_R64-1-1
   snpeff: R64-1-1.86
 rnaseq:
   transcripts: ../rnaseq/ref-transcripts.gtf

diff --git a/config/genomes/xenTro3-resources.yaml b/config/genomes/xenTro3-resources.yaml
@@ -1,5 +1,5 @@
-version: 17
+version: 18
 
 aliases:
-  ensembl: xenopus_tropicalis_vep_96_JGI_4.2
+  ensembl: xenopus_tropicalis_vep_97_JGI_4.2
   snpeff: JGI_4.2.86