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Add --cloudbiolinux argument #3691

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merged 1 commit into from Jan 23, 2023
Merged

Add --cloudbiolinux argument #3691

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2 changes: 2 additions & 0 deletions scripts/bcbio_setup_genome.py
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Expand Up @@ -229,6 +229,8 @@ def error(self, message):
help="Add ERCC spike-ins.")
parser.add_argument("--mirbase", help="species in mirbase for smallRNAseq data.")
parser.add_argument("--srna_gtf", help="gtf to use for smallRNAseq data.")
parser.add_argument("--cloudbiolinux", help="Specify a cloudbiolinux git commit hash or tag to install",
default="master")
required = parser.add_argument_group('required named arguments')
required.add_argument("--buildversion", required=True,
help=("String describing build of genome used. Examples: "
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