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merge master updates in prep for new datasource updates #262

Merged
merged 32 commits into from
Nov 13, 2016
Merged

merge master updates in prep for new datasource updates #262

merged 32 commits into from
Nov 13, 2016

Commits on Sep 9, 2016

  1. Give a traceback on errors. 

    Always give a traceback because how else do we know which line is wrong.
    @rainwoodman
    rainwoodman committed Sep 9, 2016
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  2. FOFGroups skips boxsize if paramfile has one. 

    Fixes Jerry's issue with old fof files.
    @rainwoodman
    rainwoodman committed Sep 9, 2016
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Commits on Sep 19, 2016

  1. if numpy dtype is 'object', crash in GatherArray, ScatterArray (items… 

    …ize unknown due to pointer)
    @nickhand
    nickhand committed Sep 19, 2016
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  2. pandas uses "object" for strings --> convert to unicode explicitly

    @nickhand
    nickhand committed Sep 19, 2016
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  3. if numpy dtype is 'object', crash in GatherArray, ScatterArray (items… 

    …ize unknown due to pointer)
    @nickhand
    nickhand committed Sep 19, 2016
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  4. pandas uses "object" for strings --> convert to unicode explicitly

    @nickhand
    nickhand committed Sep 19, 2016
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  5. Merge branch 'master' of github.com:nickhand/nbodykit

    @nickhand
    nickhand committed Sep 19, 2016
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  6. fix unicode conversion in pandas

    @nickhand
    nickhand committed Sep 19, 2016
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  7. handle object dtypes in pandas, not in distributedarray

    @nickhand
    nickhand committed Sep 19, 2016
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Commits on Sep 21, 2016

  1. fixing a minor typo

    @mjvakili
    mjvakili committed Sep 21, 2016
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  2. Merge pull request #252 from mjvakili/patch-1 

    fixing a minor typo in PlainText.py
    @rainwoodman
    rainwoodman committed Sep 21, 2016
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Commits on Sep 27, 2016

  1. do not try to load python 2.7 at nersc.

    @rainwoodman
    rainwoodman committed Sep 27, 2016
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Commits on Oct 18, 2016

  1. python 3 loop variable does not leak any more.

    @rainwoodman
    rainwoodman committed Oct 18, 2016
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  2. upper case.

    @rainwoodman
    rainwoodman committed Oct 18, 2016
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  3. Support for fastpm lightcone option.

    Matej committed Oct 18, 2016
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Commits on Oct 19, 2016

  1. Add interpolation to self.cosmo.engine.H(redshift).

    Matej committed Oct 19, 2016
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  2. Fixed bug with interpolation in FastPM.py.

    Matej committed Oct 19, 2016
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  3. 2nd attempt to fix the bug with cosmology and interpolation.

    Matej committed Oct 19, 2016
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  4. Merge pull request #256 from bccp/fastpm 

    Fastpm lightcone option for nbodykit.
    Matej committed Oct 19, 2016
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  5. add tophat in fk transfer of defaultpainter.

    @rainwoodman
    rainwoodman committed Oct 19, 2016
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Commits on Oct 22, 2016

  1. Add flag for velocity redshift: velocityRSD.

    Matej committed Oct 22, 2016
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  2. Default shall enable velocity RSD but remove potential RSD.

    @rainwoodman
    rainwoodman committed Oct 22, 2016
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Commits on Oct 26, 2016

  1. mpi bcast the configuration file as a string, rather than file name

    @nickhand
    nickhand committed Oct 26, 2016
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  2. Merge pull request #258 from nickhand/master 

    read config files on root before bcast in nbkit-batch
    @nickhand
    nickhand committed Oct 26, 2016
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Commits on Oct 27, 2016

  1. Fixed a bug with calling 'Position' in FastPM.py.

    Matej committed Oct 27, 2016
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Commits on Oct 30, 2016

  1. Avoid numpy bugs due to stealing dtypes.

    @rainwoodman
    rainwoodman committed Oct 30, 2016
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Commits on Oct 31, 2016

  1. Merge pull request #259 from rainwoodman/dtypestealworkaround 

    Avoid numpy bugs due to stealing dtypes.
    @rainwoodman
    rainwoodman committed Oct 31, 2016
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Commits on Nov 3, 2016

  1. bug fix: do not need to remove temp files anymore in batch mode

    @nickhand
    nickhand committed Nov 3, 2016
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  2. remove reading/writing to temporary files in batch mode entirely

    @nickhand
    nickhand committed Nov 3, 2016
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Commits on Nov 7, 2016

  1. adding explicit numpy.dtype calls to avoid numpy bug

    @nickhand
    nickhand committed Nov 7, 2016
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Commits on Nov 8, 2016

  1. bug fix introduced into ScatterArray

    @nickhand
    nickhand committed Nov 8, 2016
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  2. Merge pull request #261 from nickhand/fix_dtype 

    adding explicit numpy.dtype calls to avoid numpy bug
    @nickhand
    nickhand committed Nov 8, 2016
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