clean up legacy docs and tests

.travis.yml

@@ -27,37 +27,38 @@ before_install:
     - ./miniconda.sh -b -p $HOME/miniconda
     - export PATH=$HOME/miniconda/bin:$PATH
     - conda update --yes conda
-    
-    # set the c++ and fortran compilers 
-    - export CXX=g++-4.8 
+
+    # set the c++ and fortran compilers
+    - export CXX=g++-4.8
     - export F90=gfortran-4.8
 
 install:
     - conda create --yes -n test python=$TRAVIS_PYTHON_VERSION
     - source activate test
-    
+
     # base python setup
     - conda install --yes numpy=$NUMPY_VERSION nose cython mpi4py h5py pandas scipy pytables pyyaml astropy numba dask
     - pip install pytest pytest-cov pytest-pipeline coveralls
-    
+
     # test optional HOD data sources
-    - pip install halotools 
-    
+    - pip install halotools==0.4 # pin on 0.1.x branch
+
     # test optional Zeldovich data source
     - conda install --yes "swig>=3.0"
     - pip install --no-cache-dir classylss # ignore cache due to binaries
 
     # nbodykit and requirements
-    - pip install --pre pfft-python kdcount mpsort pmesh sharedmem bigfile --no-deps
+    - pip install --pre pfft-python kdcount mpsort sharedmem bigfile --no-deps
+    - pip install pmesh==0.1.23 # pin on 0.1.x branch
     - pip install --pre -r requirements.txt -e . # develop mode to track coverage of subproccess
-    
+
 script:
     - py.test nbodykit --cov=nbodykit --cov-report term-missing
     - bash check_tag.sh nbodykit/version.py
 
 after_success:
     - coveralls
-    
+
 deploy:
     - provider: pypi
       distributions: sdist
@@ -68,6 +69,6 @@ deploy:
       on:
         tags   : true
         condition : $TRAVIS_PYTHON_VERSION = "2.7"
-    
+
 #notifications:
 #  email: false

docs/Makefile

@@ -54,13 +54,13 @@ clean:
 	rm -rf api
 
 html-setup: apidoc plugins-apidoc plugins-list
-	
+
 plugins-apidoc: apidoc
-	echo ".. include:: nbodykit.plugins.rst" > api/plugins_ref.rst
+	echo ".. include:: nbodykit.core.rst" > api/plugins_ref.rst
 
-apidoc: 
+apidoc:
 	bash apidoc.sh
-	
+
 plugins-list:
 	python generate_plugins_list.py
 
@@ -69,8 +69,8 @@ html: html-setup
 	@echo
 	@echo "Build finished. The HTML pages are in $(BUILDDIR)/html."
 
-gh-pages: 
-	./ghp-import -n -p $(BUILDDIR)/html/ 
+gh-pages:
+	./ghp-import -n -p $(BUILDDIR)/html/
 
 dirhtml:
 	$(SPHINXBUILD) -b dirhtml $(ALLSPHINXOPTS) $(BUILDDIR)/dirhtml

docs/apidoc.sh

@@ -3,4 +3,4 @@
 if ! python -c 'import numpydoc'; then easy_install --user numpydoc; fi
 if ! python -c 'import sphinx'; then easy_install --user sphinx; fi
 
-sphinx-apidoc -H "API reference" -M -e -f -o api/ ../nbodykit ../nbodykit/extern
+sphinx-apidoc -H "API reference" -M -e -f -o api/ ../nbodykit ../nbodykit/extern ../nbodykit/test

docs/conf.py

@@ -15,13 +15,6 @@
 import os
 import shlex
 
-import mock
-MOCK_MODULES = ['mpsort', 'mpi4py', 'scipy', 'scipy.interpolate', 'h5py', 'bigfile', 
-                'kdcount', 'pmesh', 'pmesh.particlemesh', 'pmesh.domain', 'pytest',
-                'astropy']
-for mod_name in MOCK_MODULES:
-    sys.modules[mod_name] = mock.Mock()
-
 # If extensions (or modules to document with autodoc) are in another directory,
 # add these directories to sys.path here. If the directory is relative to the
 # documentation root, use os.path.abspath to make it absolute, like shown here.
@@ -148,10 +141,10 @@ def setup(app):
     html_theme = 'sphinx_rtd_theme'
     html_theme_path = [sphinx_rtd_theme.get_html_theme_path()]
 else:
-    
+
     # do the html setup
     os.system("make html-setup")
-    
+
 #html_theme = 'nature'
 
 # Theme options are theme-specific and customize the look and feel of a theme