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abyss-dida: non-portable use of readlink #87

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benvvalk opened this issue Nov 3, 2015 · 1 comment
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abyss-dida: non-portable use of readlink #87

benvvalk opened this issue Nov 3, 2015 · 1 comment
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benvvalk commented Nov 3, 2015

A user has reported the following error when running an ABySS assembly with DIDA on his/her system:

readlink: extra operand `UNSPLIT/SXPX.R_TRIMMED.fastq.gz'
Try `readlink --help' for more information.

It looks that when I wrote the abyss-dida shell script, I was assuming that readlink could handle multiple file arguments, whereas some versions can only handle a single file argument.
@benvvalk benvvalk self-assigned this Nov 3, 2015
@benvvalk benvvalk added the bug label Nov 3, 2015
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Fixed by f807b27

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