Dev #68
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| name: Codecov | |
| on: | |
| push: | |
| branches: [ "main" ] | |
| paths: | |
| - '.github/workflows/codecov.yaml' | |
| - '.github/.codecov.yml' | |
| - 'config/**' | |
| - 'tests/**' | |
| - 'test_data/**' | |
| - 'workflow/**' | |
| - 'koverage/**' | |
| - 'setup.py' | |
| pull_request: | |
| branches: [ "main" ] | |
| paths: | |
| - '.github/workflows/codecov.yaml' | |
| - '.github/.codecov.yml' | |
| - 'config/**' | |
| - 'tests/**' | |
| - 'test_data/**' | |
| - 'workflow/**' | |
| - 'koverage/**' | |
| - 'setup.py' | |
| permissions: | |
| contents: read | |
| jobs: | |
| tests: | |
| name: "Python ${{ matrix.python-version }}" | |
| runs-on: ${{ matrix.os }} | |
| defaults: | |
| run: | |
| shell: bash -el {0} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest] | |
| python-version: ["3.11"] | |
| steps: | |
| - uses: "actions/checkout@v3" | |
| with: | |
| fetch-depth: 0 | |
| # Setup env | |
| - uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| auto-update-conda: true | |
| miniforge-version: "latest" | |
| miniforge-variant: Mambaforge | |
| use-mamba: true | |
| mamba-version: "*" | |
| channels: conda-forge,bioconda,defaults | |
| channel-priority: strict | |
| python-version: ${{ matrix.python-version }} | |
| auto-activate-base: false | |
| - name: "Test and generate coverage report on ${{ matrix.os }} for Python ${{ matrix.python-version }}" | |
| run: | | |
| python -m pip install --upgrade pip | |
| python -m pip install pytest coverage | |
| python -m pip install . | |
| coverage run -m pytest | |
| coverage xml | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v4 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| file: coverage.xml | |
| fail_ci_if_error: true |