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Galaxy and Training

2019 updates from the Galaxy Training Network

Bérénice Batut and the Galaxy Training Network

Galaxy Community Conference - July 2019

Note:

PhD student studying impact of microbiota and sex in microglya aging (she)

  • Generates data: RNA-seq, metagenomics, metabolomics, etc
  • No bioinformatician in her group
  • Heard about Galaxy via one of its colleague
  • It could help her
  • but no idea how to use it to analyze its data

The learner's path

Galaxy workshops

https://galaxyproject.org/events/

Note:

  • Heard about the Galaxy Training Network
  • Attend one workshop organized by the GTN

Tutorials from Galaxy Training Material

https://training.galaxyproject.org/

Note:

2 days workshop on RNA-seq

  • Learnt about Galaxy and RNA-seq data analysis
  • Bookmarked the Galaxy Training Material website

Back to lab

Note:

  • Back to lab, she applied the tutorials to her own data

Back to data

Note:

  • Started to follow new ones in transcriptomics (number of new tutorials?)
  • Following the learning paths

Learning more?

  • 19 topics

    • 5 new topics: Metabolomics, Computational Chemistry, Data manipulation, User Interface and Features, Ecological data analysis

  • 140+ tutorials

    • 68 new tutorials
      • 18 new tutorials for new topics
      • Migration of 23 admin tutorials
      • 27 new tutorials in existing topics

Learning more?

Note:

  • How to find interesting ones?

    • Different levels
    • In Spanish (translation)
    • Search on TeSS (schemas annotation of each tutorial)

From learner to teacher

Note:

Becomes more and more confident with Galaxy use and data analysis: her colleagues always came to her with many questions

  • Decides to organize a small Galaxy RNA-seq workshop at her institute: a bit afraid

How to teach using Galaxy?

Note:

  • Found a topic on the training material to organize workshop
    • 5 tutorials and slides to kickoff tutorial
    • Philosophies

https://galaxyproject.eu/tiaas

Note:

  • Organization of a workshop: how to be sure the tutorials will work?

60+ training - 1,200 participants

https://galaxyproject.eu/tiaas

Becoming a contributor

Note:

Got more requests to have workshops. But found also that some tutorials are missing (e.g. ATAC-seq data analysis)

  • Decides to create new tutorials

Online CoFest and community calls

  • Every 3 months
  • One day of CoFest
  • 2 community calls
  • Next one: August, 15th

Note:

  • Attend one of the online CoFest

A Training Development Kit

Note:

  • Check the contributing topic and found the Training Development Kit

Feedbacks

Community of contributors

120+ contributors - 46 new ones

https://training.galaxyproject.org/hall-of-fame

Note:

  • Contribute and join the community of contributors

2019 updates

Note:

  • New content: 4 new topics, 66 new tutorials
  • Features for users
    • Learning paths
    • Levels
    • Translation
    • Search box
  • Resources about teaching and hosting Galaxy trainings
  • TiaaS
  • Workflow testing
  • Online CoFest and community calls
  • Training Development Kit with Planemo
  • Feedbacks

Thank you!

training.galaxyproject.org

2019 updates