Smith-Waterman Algorithm #292
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align/align.go
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| alignB = string(stringB[j-1]) + alignB | ||
| i-- | ||
| j-- | ||
| } else if matrix[i][j] == matrix[i-1][j]+scoring.GapPenalty { |
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this condition isn't covered by tests
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Good point! Just changed the test case to have gaps on both alignment strings: 98b16bf
align/align.go
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| alignA = "-" + alignA | ||
| alignB = string(stringB[j-1]) + alignB | ||
| j-- | ||
| } else { |
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is there any case where this can happen? Shouldn't panic but should return an error if this case is possible.
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I am pretty sure this case should never happen. It would mean that the matrix was constructed erroneously or there is a bug somewhere.
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