updated clean targets

bedops · Jan 28, 2015 · fb2e1a4 · fb2e1a4
1 parent e1e6caf
commit fb2e1a4
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diff --git a/packaging/os_x/BEDOPS.pkgproj b/packaging/os_x/BEDOPS.pkgproj
@@ -651,6 +651,38 @@
 													<key>UID</key>
 													<integer>0</integer>
 												</dict>
+												<dict>
+													<key>CHILDREN</key>
+													<array/>
+													<key>GID</key>
+													<integer>0</integer>
+													<key>PATH</key>
+													<string>resources/bin/rmsk2bed</string>
+													<key>PATH_TYPE</key>
+													<integer>1</integer>
+													<key>PERMISSIONS</key>
+													<integer>493</integer>
+													<key>TYPE</key>
+													<integer>3</integer>
+													<key>UID</key>
+													<integer>0</integer>
+												</dict>
+												<dict>
+													<key>CHILDREN</key>
+													<array/>
+													<key>GID</key>
+													<integer>0</integer>
+													<key>PATH</key>
+													<string>resources/bin/rmsk2starch</string>
+													<key>PATH_TYPE</key>
+													<integer>1</integer>
+													<key>PERMISSIONS</key>
+													<integer>493</integer>
+													<key>TYPE</key>
+													<integer>3</integer>
+													<key>UID</key>
+													<integer>0</integer>
+												</dict>
 												<dict>
 													<key>CHILDREN</key>
 													<array/>

diff --git a/system.mk/Makefile.darwin b/system.mk/Makefile.darwin
@@ -78,6 +78,7 @@ clean: clean_debug clean_gprof all
 	rm -f ${BINDIR}/gff2bed
 	rm -f ${BINDIR}/gtf2bed
 	rm -f ${BINDIR}/psl2bed
+	rm -f ${BINDIR}/rmsk2bed
 	rm -f ${BINDIR}/sam2bed
 	rm -f ${BINDIR}/vcf2bed
 	rm -f ${BINDIR}/wig2bed
@@ -87,6 +88,7 @@ clean: clean_debug clean_gprof all
 	rm -f ${BINDIR}/gff2starch
 	rm -f ${BINDIR}/gtf2starch
 	rm -f ${BINDIR}/psl2starch
+	rm -f ${BINDIR}/rmsk2starch
 	rm -f ${BINDIR}/sam2starch
 	rm -f ${BINDIR}/vcf2starch
 	rm -f ${BINDIR}/wig2starch
@@ -118,6 +120,7 @@ clean_debug:
 	rm -f ${BINDIR}/gff2bed
 	rm -f ${BINDIR}/gtf2bed
 	rm -f ${BINDIR}/psl2bed
+	rm -f ${BINDIR}/rmsk2bed
 	rm -f ${BINDIR}/sam2bed
 	rm -f ${BINDIR}/vcf2bed
 	rm -f ${BINDIR}/wig2bed
@@ -127,6 +130,7 @@ clean_debug:
 	rm -f ${BINDIR}/gff2starch
 	rm -f ${BINDIR}/gtf2starch
 	rm -f ${BINDIR}/psl2starch
+	rm -f ${BINDIR}/rmsk2starch
 	rm -f ${BINDIR}/sam2starch
 	rm -f ${BINDIR}/vcf2starch
 	rm -f ${BINDIR}/wig2starch
@@ -146,6 +150,7 @@ clean_gprof:
 	rm -f ${BINDIR}/gff2bed
 	rm -f ${BINDIR}/gtf2bed
 	rm -f ${BINDIR}/psl2bed
+	rm -f ${BINDIR}/rmsk2bed
 	rm -f ${BINDIR}/sam2bed
 	rm -f ${BINDIR}/vcf2bed
 	rm -f ${BINDIR}/wig2bed
@@ -155,6 +160,7 @@ clean_gprof:
 	rm -f ${BINDIR}/gff2starch
 	rm -f ${BINDIR}/gtf2starch
 	rm -f ${BINDIR}/psl2starch
+	rm -f ${BINDIR}/rmsk2starch
 	rm -f ${BINDIR}/sam2starch
 	rm -f ${BINDIR}/vcf2starch
 	rm -f ${BINDIR}/wig2starch

diff --git a/system.mk/Makefile.linux b/system.mk/Makefile.linux
@@ -47,6 +47,7 @@ clean: clean_debug clean_gprof $(SUBDIRS)
 	rm -f ${BINDIR}/gff2bed
 	rm -f ${BINDIR}/gtf2bed
 	rm -f ${BINDIR}/psl2bed
+	rm -f ${BINDIR}/rmsk2bed
 	rm -f ${BINDIR}/sam2bed
 	rm -f ${BINDIR}/vcf2bed
 	rm -f ${BINDIR}/wig2bed
@@ -56,6 +57,7 @@ clean: clean_debug clean_gprof $(SUBDIRS)
 	rm -f ${BINDIR}/gff2starch
 	rm -f ${BINDIR}/gtf2starch
 	rm -f ${BINDIR}/psl2starch
+	rm -f ${BINDIR}/rmsk2starch
 	rm -f ${BINDIR}/sam2starch
 	rm -f ${BINDIR}/vcf2starch
 	rm -f ${BINDIR}/wig2starch
@@ -84,6 +86,7 @@ clean_debug:
 	rm -f ${BINDIR}/gff2bed
 	rm -f ${BINDIR}/gtf2bed
 	rm -f ${BINDIR}/psl2bed
+	rm -f ${BINDIR}/rmsk2bed
 	rm -f ${BINDIR}/sam2bed
 	rm -f ${BINDIR}/vcf2bed
 	rm -f ${BINDIR}/wig2bed
@@ -93,6 +96,7 @@ clean_debug:
 	rm -f ${BINDIR}/gff2starch
 	rm -f ${BINDIR}/gtf2starch
 	rm -f ${BINDIR}/psl2starch
+	rm -f ${BINDIR}/rmsk2starch
 	rm -f ${BINDIR}/sam2starch
 	rm -f ${BINDIR}/vcf2starch
 	rm -f ${BINDIR}/wig2starch
@@ -112,6 +116,7 @@ clean_gprof:
 	rm -f ${BINDIR}/gff2bed
 	rm -f ${BINDIR}/gtf2bed
 	rm -f ${BINDIR}/psl2bed
+	rm -f ${BINDIR}/rmsk2bed
 	rm -f ${BINDIR}/sam2bed
 	rm -f ${BINDIR}/vcf2bed
 	rm -f ${BINDIR}/wig2bed
@@ -121,6 +126,7 @@ clean_gprof:
 	rm -f ${BINDIR}/gff2starch
 	rm -f ${BINDIR}/gtf2starch
 	rm -f ${BINDIR}/psl2starch
+	rm -f ${BINDIR}/rmsk2starch
 	rm -f ${BINDIR}/sam2starch
 	rm -f ${BINDIR}/vcf2starch
 	rm -f ${BINDIR}/wig2starch