conf.py

#!/usr/bin/env python3
# -*- coding: utf-8 -*-
#
# bel documentation build configuration file, created by
# sphinx-quickstart on Mon Aug  7 15:03:45 2017.
#
# This file is execfile()d with the current directory set to its
# containing dir.
#
# Note that not all possible configuration values are present in this
# autogenerated file.
#
# All configuration values have a default; values that are commented out
# serve to show the default.

# If extensions (or modules to document with autodoc) are in another directory,
# add these directories to sys.path here. If the directory is relative to the
# documentation root, use os.path.abspath to make it absolute, like shown here.
#

import os
import sys
import sphinx_rtd_theme

# To get ReadTheDocs working - autodoc missing modules error
sys.path.insert(0, os.path.abspath("."))
sys.path.insert(0, os.path.abspath("../"))

# -- General configuration ------------------------------------------------

# If your documentation needs a minimal Sphinx version, state it here.
#
# needs_sphinx = '1.0'

# Add any Sphinx extension module names here, as strings. They can be
# extensions coming with Sphinx (named 'sphinx.ext.*') or your custom ones.
# NOTE: Must load sphinx.ext.napoleon before sphinx_autodoc_typehints.
extensions = [
    "sphinx.ext.autodoc",
    "sphinx_click.ext",
    "sphinx.ext.napoleon",
    "sphinx_autodoc_typehints",
    "sphinx.ext.extlinks",
    "releases",
]

extlinks = {
    "issuenum": ("https://github.com/belbio/bel/issues/%s", "issue "),
    "project": ("https://github.com/belbio/bel/blob/master/%s", "project file "),
}

# Add any paths that contain templates here, relative to this directory.
templates_path = ["_templates"]

# The suffix(es) of source filenames.
# You can specify multiple suffix as a list of string:
#
# source_suffix = ['.rst', '.md']
source_suffix = ".rst"

# The master toctree document.
master_doc = "index"

# General information about the project.
project = "BEL Python Package"
copyright = "2017, BELBio"
author = "William Hayes, David Chen"

# The version info for the project you're documenting, acts as replacement for
# |version| and |release|, also used in various other places throughout the
# built documents.
#
# The short X.Y version.
version = "0.12.30"
# The full version, including alpha/beta/rc tags.
release = "0.12.30"

# The language for content autogenerated by Sphinx. Refer to documentation
# for a list of supported languages.
#
# This is also used if you do content translation via gettext catalogs.
# Usually you set "language" from the command line for these cases.
language = None

# List of patterns, relative to source directory, that match files and
# directories to ignore when looking for source files.
# This patterns also effect to html_static_path and html_extra_path
exclude_patterns = ["_build", "Thumbs.db", ".DS_Store"]

# The name of the Pygments (syntax highlighting) style to use.
pygments_style = "sphinx"

# If true, `todo` and `todoList` produce output, else they produce nothing.
todo_include_todos = False


# -- Options for HTML output ----------------------------------------------

# html_theme = 'alabaster'
# html_theme_options = {
#     'description': 'A Python library that allows biologists and developers to parse, test, and validate BEL.',
#     'github_user': 'belbio',
#     'github_repo': 'bel',
#     'github_button': True,
#     'fixed_sidebar': True,
# }

html_theme = "sphinx_rtd_theme"
html_theme_path = [sphinx_rtd_theme.get_html_theme_path()]
html_theme_options = {
    "collapse_navigation": False,
    "display_version": True,
    "navigation_depth": 3,
    "logo_only": False,
    "display_version": True,
    "prev_next_buttons_location": "both",
    # 'style_external_links': True,  # Theme error  unsupported theme option
}
html_logo = "_static/images/logo-w200.png"
html_favicon = "_static/images/favicon.png"

# Add any paths that contain custom static files (such as style sheets) here,
# relative to this directory. They are copied after the builtin static files,
# so a file named "default.css" will overwrite the builtin "default.css".
html_static_path = ["_static"]

# Custom sidebar templates, must be a dictionary that maps document names
# to template names.
#
# This is required for the alabaster theme
# refs: http://alabaster.readthedocs.io/en/latest/installation.html#sidebars
html_sidebars = {
    "**": [
        "about.html",
        "navigation.html",
        "relations.html",  # needs 'show_related': True theme option to display
        "searchbox.html",
        "donate.html",
    ]
}


# -- Options for HTMLHelp output ------------------------------------------

# Output file base name for HTML help builder.
htmlhelp_basename = "bel_doc"


# -- Options for LaTeX output ---------------------------------------------

latex_elements = {
    # The paper size ('letterpaper' or 'a4paper').
    #
    # 'papersize': 'letterpaper',
    # The font size ('10pt', '11pt' or '12pt').
    #
    # 'pointsize': '10pt',
    # Additional stuff for the LaTeX preamble.
    #
    # 'preamble': '',
    # Latex figure (float) alignment
    #
    # 'figure_align': 'htbp',
}

# Grouping the document tree into LaTeX files. List of tuples
# (source start file, target name, title,
#  author, documentclass [howto, manual, or own class]).
latex_documents = [
    (master_doc, "bel.tex", "bel Documentation", "William Hayes, David Chen", "manual")
]


# -- Options for manual page output ---------------------------------------

# One entry per manual page. List of tuples
# (source start file, name, description, authors, manual section).
man_pages = [(master_doc, "bel", "bel Documentation", [author], 1)]


# -- Options for Texinfo output -------------------------------------------

# Grouping the document tree into Texinfo files. List of tuples
# (source start file, target name, title, author,
#  dir menu entry, description, category)
texinfo_documents = [
    (
        master_doc,
        "bel",
        "bel Documentation",
        author,
        "bel",
        "BEL tools and services.",
        "Miscellaneous",
    )
]