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README.rst

BEL package

Travis Build/Testing Test Coverage Documentation Status

Informational badges

PyPi Latest BEL License Python Versions Supported 'Waffle.io - Columns and their card count' Maintainability

BEL Python Package

Main documentation is at <http://bel.readthedocs.io/en/latest/>.

Currently handles BEL 2.0.0, but it is easily extensible to new versions of BEL.

Install

pip install bel

Planned features

  • [Done] Allow multiple BEL Specification files for different BEL versions (including experimental versions)
  • [Done] Provide a standard EBNF file for parser generation for each BEL Specification
  • [Done] Identify syntax issues in the statement and provide suggestions on fixing them
  • [Done] Identify semantic issues in the statement and provide suggestions on fixing them
  • [Done] Identify unknown Namespaces or Namespace values
  • [Done] Convert BEL statements into an AST and then back into a BEL Statement
  • Provide autocompletion suggestions given a location in the BEL Statement
  • Read a Nanopub and validate the full Nanopub, e.g. the BEL statement, Annotations, Citation, etc
  • BEL Pipeline - Process new Nanopubs in NanopubStore into Edges and load in EdgeStore
  • [Done] Convert BELScript into BEL Nanopubs
  • Command line interface (partially done)
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