Merge 45268e4 into 22751a7

.gitignore

@@ -5,4 +5,5 @@
 *.pdf
 *.txt
 .coverage
+__pycache__
 *~

thunderfish/DextersThunderfishAddition/README

@@ -0,0 +1,21 @@
+leticia_filedata.txt -- long files with filename, date and day/night and time - missing some files
+allfiles.txt -- all long files, but without details
+
+
+
+### analyse_pulse_data with the .WAV file as input produces:
+eods5_70914L01_F15_1742.npy -- numpy array with results from analyze_pulse_data
+
+### this eodsfile can be fed to analyzeEods_lowpass.py to analyze the frequencies and amplitudes and produce the plots over the length of the full recordings... 
+
+
+70914L01_F15_1742_freqs2_lp.npy -- computed frequencies, meaned over seconds/half seconds
+70914L01_F15_1742_amps2_lp.npy -- computed amplitudes, averaged over seconds/...
+-- Numpy 2d-arrays, first axis : different fish classes, second axis: timesteps (seconds/half_seconds)
+
+70914L01_F15_1742_AmpFreq7_lp.pdf -- pdf with plotted EOD-amplitudes and frequencies, no classes plotted, highest number is latest version, lp = lowpass smoothing
+
+foraging_ ... npz file with status far, near, on,  each np.nan for not this status and 1 if it has the status at a given timestep, same time resolution as freqs / amps - files 
+
+ontimes, other files - outdated
+

thunderfish/DextersThunderfishAddition/allfiles.txt

@@ -0,0 +1,155 @@
+60615L01F9.WAV
+60116L01G9.WAV
+60115L01F10.WAV
+60615L09G7.WAV
+70730L06_G10_1737.WAV
+70729L01_G10_1743.WAV
+70729L01_G10_557.WAV
+70524L01_G10.WAV
+71112L01_G10_608.WAV
+60926L01F13.WAV
+70917L01_G10_1738.WAV
+71113L01_G10_1757.WAV
+70916L01_G10_630.WAV
+70730L06_F15_1735.WAV
+71110L01_F12_1650.WAV
+70730L01_G10_609.WAV
+80118L01_F12_1703.WAV
+40113L01F10.WAV
+70728L01_F15_1034.WAV
+70116L01E14.WAV
+60722L02G14.WAV
+70320L01_B6.WAV
+61107L01F14.WAV
+70730L01_F15_605.WAV
+60722L02D6.WAV
+60722L01D6.WAV
+60926L01B3.WAV
+70114L02D14.WAV
+70522L07_D10.WAV
+70917L01_D7_740.WAV
+61106L01F14Noche.WAV
+60721L01G14.WAV
+51104L01Embarcadero.WAV
+71113L01_G10_636.WAV
+80121L01_F13_1731.WAV
+70915L01_G10_735.WAV
+80120L01_F13_640.WAV
+80121L01_F13_608.WAV
+71112L01_F12_1817.WAV
+60725L23G12.WAV
+71111L01_G10_1810.WAV
+70916L02_Electrophorus embarcadero_1905.WAV
+70729L01_F15_1740.WAV
+51106L01Electrophorus.WAV
+31105L01F14.WAV
+60612L02rondoniF3.WAV
+70915L01_F15_1805.WAV
+70917L02_Electrophorus embarcadero_1849.WAV
+70917L01_G10_724.WAV
+61103L01F14.WAV
+71111L10_F12_1807.WAV
+60613L02rondoniF9.WAV
+40320L01_G11.WAV
+60925L01F12.WAV
+60925L01F11.WAV
+70728L01_G10_1048.WAV
+61108L01Electrophorus.WAV
+60924L01F12.WAV
+70915L01_Electrophorus embarcadero_1242.WAV
+60722L01G14.WAV
+60926L01F12.WAV
+80121L01_F11_606.WAV
+70730L01_Solo Electrophorus embarcadero_735.WAV
+71113L01_F12_559.WAV
+70114L01D14.WAV
+70524L02_D10.WAV
+70522L01_G12.WAV
+60614L22rondoniG9.WAV
+70915L01_G10_1802.WAV
+70320L01_B6.WAV
+40112L01G9.WAV
+70730L02_Solo Electrophorus embarcadero.WAV
+60923L01.WAV
+70914L01_F15_1742.WAV
+70115L01D14.WAV
+70727L01_E14_1641.WAV
+30927L04E12.WAV
+61106L01Electrophorus.WAV
+70917L01_D7_1739.WAV
+60723L02G14.WAV
+30924L01C2.WAV
+40116L01G9.WAV
+61107L01Electrophorus.WAV
+60723L01G14.WAV
+71112L01_G10_1818.WAV
+70915L02_Electrophorus embarcadero_1900.WAV
+60725L01G14.WAV
+70521L01_D4.WAV
+70729L01_Solo Electrophorus embarcadero_733.WAV
+70728L01_F15_1721.WAV
+70521L01_F12.WAV
+30104L01_Solo Electrophorus embarcadero_1732.WAV
+60613L01rondoniF11.WAV
+61106L01F14.WAV
+70914L01_E13_1735.WAV
+40114L01F10.WAV
+60724L01B1.WAV
+80119L01_Downstream fuera grilla_1425.WAV
+71113L01_F12_1755.WAV
+70522L48_G12.WAV
+80119L01_G12_1747.WAV
+70319L01_F1.WAV
+70112L01E15.WAV
+80121L01_F11_1730.WAV
+80120L01_G10_1731.WAV
+80120L01_G10_626.WAV
+30925L06F11.WAV
+61107L01F14Noche.WAV
+70524L01_D10.WAV
+70916L02_F15_1804.WAV
+60925L06F12.WAV
+60113L01F10.WAV
+70915L01_F13_738.WAV
+60721L01G13.WAV
+51107L01Electrophorus.WAV
+70523L01_G11.WAV
+50926L08F13.WAV
+70917L01_Electrophorus embarcadero_811.WAV
+60114L01F10.WAV
+70522L01_D10.WAV
+70317L01_B1.WAV
+70520L01_D13.WAV
+70729L01_F15_553.WAV
+70916L01_F15_648.WAV
+40317L01_G11.WAV
+60723L01D5.WAV
+70317L01_G11.WAV
+71111L01_F12_603.WAV
+40319L01_F1.WAV
+71112L01_F12_605.WAV
+70916L01_Electrophorus embarcadero_830.WAV
+60926L04F12.WAV
+61104L01F14.WAV
+70520L01_F10.WAV
+60924L03C2.WAV
+70319L01_G11.WAV
+60927L08F13.WAV
+60927L01F13.WAV
+60724L02G14.WAV
+70916L01_G10_1805.WAV
+70729L02_Solo Electrophorus embarcadero_1841.WAV
+70728L01_G10_1725.WAV
+71111L01_G10_1339.WAV
+70523L01_D10.WAV
+70320L01_G11.WAV
+80120L01_F13_1733.WAV
+61106L02Electrophorus.WAV
+60724L01G14.WAV
+60723L02D5.WAV
+51105L01Embarcadero.WAV
+70113L01D14.WAV
+40115L01F10.WAV
+70727L01_G10_1643.WAV
+61105L01F14.WAV
+60724L02B1.WAV