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| @inproceedings{gephi, | ||
| title = {Gephi: {An} {Open} {Source} {Software} for {Exploring} and {Manipulating} {Networks}}, | ||
| url = {http://www.aaai.org/ocs/index.php/ICWSM/09/paper/view/154}, | ||
| abstract = {Jacomy}, | ||
| author = {Bastian, Mathieu and Heymann, Sebastien and Jacomy, Mathieu}, | ||
| year = {2009} | ||
| title = {Gephi: { An } { Open } { Source } { Software } for { Exploring } and { Manipulating } { Networks }}, | ||
| url = {http://www.aaai.org/ocs/index.php/ICWSM/09/paper/view/154}, | ||
| abstract = {Jacomy}, | ||
| author = {Bastian, Mathieu and Heymann, Sebastien and Jacomy, Mathieu}, | ||
| year = {2009}, | ||
| doi = {10.13140/2.1.1341.1520} | ||
| } | ||
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| @article{cytoscape, | ||
| title={Cytoscape: a software environment for integrated models of biomolecular interaction networks}, | ||
| author={Shannon, Paul and Markiel, Andrew and Ozier, Owen and Baliga, Nitin S and Wang, Jonathan T and Ramage, Daniel and Amin, Nada and Schwikowski, Benno and Ideker, Trey}, | ||
| journal={Genome research}, | ||
| volume={13}, | ||
| number={11}, | ||
| pages={2498--2504}, | ||
| year={2003}, | ||
| publisher={Cold Spring Harbor Lab} | ||
| title = {Cytoscape: a software environment for integrated models of biomolecular interaction networks}, | ||
| author = {Shannon, Paul and Markiel, Andrew and Ozier, Owen and Baliga, Nitin S and Wang, Jonathan T and Ramage, Daniel and Amin, Nada and Schwikowski, Benno and Ideker, Trey}, | ||
| journal = {Genome research}, | ||
| volume = {13}, | ||
| number = {11}, | ||
| pages = {2498--2504}, | ||
| year = {2003}, | ||
| publisher = {Cold Spring Harbor Lab}, | ||
| doi = {10.1101/gr.1239303} | ||
| } | ||
|
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||
| @article{webweb, | ||
| title = {webweb: a tool for creating, displaying, and sharing interactive network visualizations on the web}, | ||
| shorttitle = {webweb}, | ||
| journal = {Journal of Open Source Software}, | ||
| author = {Wapman, Hunter K and Larremore, Daniel B}, | ||
| year = {2019} | ||
| title = {webweb: a tool for creating, displaying, and sharing interactive network visualizations on the web}, | ||
| shorttitle = {webweb}, | ||
| journal = {Journal of Open Source Software}, | ||
| author = {Wapman, Hunter K and Larremore, Daniel B}, | ||
| year = {2019} | ||
| } | ||
|
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| @article{matplotlib, | ||
| title = {Matplotlib: {A} 2D graphics environment}, | ||
| volume = {9}, | ||
| doi = {10.1109/MCSE.2007.55}, | ||
| abstract = {Matplotlib is a 2D graphics package used for Python for application development, interactive scripting, and publication-quality image generation across user interfaces and operating systems.}, | ||
| number = {3}, | ||
| journal = {Computing In Science \& Engineering}, | ||
| author = {Hunter, J. D.}, | ||
| year = {2007}, | ||
| pages = {90--95} | ||
| title = {Matplotlib: { A } 2D graphics environment}, | ||
| volume = {9}, | ||
| doi = {10.1109/MCSE.2007.55}, | ||
| abstract = {Matplotlib is a 2D graphics package used for Python for application development, interactive scripting, and publication-quality image generation across user interfaces and operating systems.}, | ||
| number = {3}, | ||
| journal = {Computing In Science \& Engineering}, | ||
| author = {Hunter, J. D.}, | ||
| year = {2007}, | ||
| pages = {90--95} | ||
| } | ||
|
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| @article{d3, | ||
| title = {D3: {Data}-{Driven} {Documents}}, | ||
| volume = {17}, | ||
| number = {12}, | ||
| journal = {IEEE Transactions on Visualization and Computer Graphics}, | ||
| author = {Bostock, Michael and Ogievetsky, Vadim and Heer, Jeffrey}, | ||
| year = {2011} | ||
| title = {D3: { Data } - { Driven } { Documents }}, | ||
| volume = {17}, | ||
| number = {12}, | ||
| journal = {IEEE Transactions on Visualization and Computer Graphics}, | ||
| author = {Bostock, Michael and Ogievetsky, Vadim and Heer, Jeffrey}, | ||
| year = {2011}, | ||
| doi = {10.1109/TVCG.2011.185} | ||
| } | ||
|
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| @book{networkx, | ||
| address = {Pasadena, CA USA}, | ||
| title = {Exploring network structure, dynamics, and function using {NetworkX}}, | ||
| volume = {7}, | ||
| publisher = {SciPi2008}, | ||
| author = {Aric A. Hagberg, Daniel A. Schult and Pieter J. Swart}, | ||
| editor = {G{\"a}el Varoquaux, Travis Vaught, and Millman, Jarrod}, | ||
| year = {2008} | ||
| address = {Pasadena, CA USA}, | ||
| title = {Exploring network structure, dynamics, and function using { NetworkX }}, | ||
| volume = {7}, | ||
| publisher = {SciPi2008}, | ||
| author = {Aric A. Hagberg, Daniel A. Schult and Pieter J. Swart}, | ||
| editor = {G { \"a } el Varoquaux, Travis Vaught, and Millman, Jarrod}, | ||
| year = {2008} | ||
| } | ||
|
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||
| @inproceedings{graphviz, | ||
| title = {Graphviz {\textemdash} open source graph drawing tools}, | ||
| booktitle = {Lecture {Notes} in {Computer} {Science}}, | ||
| publisher = {Springer-Verlag}, | ||
| author = {Ellson, John and Gansner, Emden and Koutsofios, Lefteris and North, Stephen and Woodhull, Gordon and Description, Short and Technologies, Lucent}, | ||
| year = {2001}, | ||
| pages = {483--484}, | ||
| file = {Citeseer - Full Text PDF:/Users/bfmaier/Zotero/storage/LS2KQZ99/Ellson et al. - 2001 - Graphviz {\textemdash} open source graph drawing tools.pdf:application/pdf;Citeseer - Snapshot:/Users/bfmaier/Zotero/storage/IXILUSLA/summary.html:text/html} | ||
| title = {Graphviz { \textemdash } open source graph drawing tools}, | ||
| booktitle = {Lecture { Notes } in { Computer } { Science }}, | ||
| publisher = {Springer-Verlag}, | ||
| author = {Ellson, John and Gansner, Emden and Koutsofios, Lefteris and North, Stephen and Woodhull, Gordon and Description, Short and Technologies, Lucent}, | ||
| year = {2001}, | ||
| pages = {483--484}, | ||
| file = {Citeseer - Full Text PDF:/Users/bfmaier/Zotero/storage/LS2KQZ99/Ellson et al. - 2001 - Graphviz { \textemdash } open source graph drawing tools.pdf:application/pdf;Citeseer - Snapshot:/Users/bfmaier/Zotero/storage/IXILUSLA/summary.html:text/html} | ||
| } | ||
|
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||
| @online{developersurvey, | ||
| author = {Stack Overflow}, | ||
| adress = {https://insights.stackoverflow.com/survey/2019?utm_source=so-owned&utm_medium=blog&utm_campaign=dev-survey-2019&utm_content=launch-blog}, | ||
| title = {Stack Overflow Developer Survey}, | ||
| year = {2019}, | ||
| urldate = {2019-04-23} | ||
| author = {Stack Overflow}, | ||
| adress = {https://insights.stackoverflow.com/survey/2019?utm_source=so-owned&utm_medium=blog&utm_campaign=dev-survey-2019&utm_content=launch-blog}, | ||
| title = {Stack Overflow Developer Survey}, | ||
| year = {2019}, | ||
| urldate = {2019-04-23} | ||
| } | ||
|
|
||
| @article{graphtool, | ||
| title = {The graph-tool python library}, | ||
| url = {http://figshare.com/articles/graph_tool/1164194}, | ||
| doi = {10.6084/m9.figshare.1164194}, | ||
| urldate = {2014-09-10}, | ||
| journal = {figshare}, | ||
| author = {Peixoto, Tiago P.}, | ||
| year = {2014}, | ||
| keywords = {all, complex networks, graph, network, other} | ||
| title = {The graph-tool python library}, | ||
| url = {http://figshare.com/articles/graph_tool/1164194}, | ||
| doi = {10.6084/m9.figshare.1164194}, | ||
| urldate = {2014-09-10}, | ||
| journal = {figshare}, | ||
| author = {Peixoto, Tiago P.}, | ||
| year = {2014}, | ||
| keywords = {all, complex networks, graph, network, other} | ||
| } |