This project is a client/server to manage Biotech Data. It is implemented using FastAPI and NextJS, with a Postgres database. Code is written in Python and TypeScript.
This project is deployed at https://biostack.42borgata.com/
Note: this project is an exercise
To install and start the app, we rely on a bash script and docker compose.
Prerequisites:
- docker and docker-compose must be installed
Run ./biostask.sh install and follow the instructions.
Run ./biostask.sh start and follow the instructions.
- Add more fields on a sample detail (notes, tags, etc.)
- Permissions: add a user table and credentials on the API
- Use multipart/form-data to upload a sample (name, type,..., and file! )
- Allow to upload file using third party services (S3, google drive, etc)
- Deploy on a VPS
- Allow http only (for dev purposes) in addition to https
- Implement file upload on the UI
- Highlight items in the light, so user can understand they are clickable.
- Add small icon-buttons to edit/delete/view a sample (only visible when row is hovered)
- Improve feedback when user create/edit.
- Allow to add a file during creation.
- Add postres and fastapi to the existing docker-compose.yml
- Use Github Actions's services to run pytest with postgres
- Limit upload to 1MB
- Setup Alembic to handle DB upgrades